WormBase Tree Display for Variation: WBVar00118458

WBVar00118458 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00118458
    Other_name: cbs53979
    HGVSg: chrI:g.8928016T>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2887d2
    Flanking_sequences: atggtaattgttttttttaatgatttgaaatagtcgagggttccagtata gatttcccctttcgactcgttcagaatgaaaccgaaagagatgccgccgg
    Mapping_target: cb25.fpc2887d2
    Type_of_mutation: Substitution: A G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 1000
        TTTAAA AhaIII, DraI 414 361 161 64
        TGCA CviRI, HpyCH4V 845 155
        TCGA EsaBC3I, TaqI, TthHB8I 337 249 193 150 42 29
        CAC HindI 195 170 166 100 75 46 41 39 37 25 25 19 11 10 10 9 7 7 6 2
        TTAA MseI, Tru1I, Tru9I 242 185 161 119 87 69 63 39 35
        AATT Sse9I, TasI, Tsp509I, TspEI 263 171 135 119 105 88 55 47 9 8
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 500 500
        TTTAAA AhaIII, DraI 775 161 64
        TGCA CviRI, HpyCH4V 1000
        TCGA EsaBC3I, TaqI, TthHB8I 337 249 193 150 71
        CAC HindI 195 166 100 85 85 75 46 41 39 37 25 25 19 11 10 10 9 7 7 6 2
        TTAA MseI, Tru1I, Tru9I 242 185 161 118 88 69 63 39 35
        AATT Sse9I, TasI, Tsp509I, TspEI 263 171 135 105 88 73 55 47 46 9 8
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00033322
      WBGene00033324
    Transcript: CBG12363.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG12363.1:c.*682+48A>G
        Intron_number: 8/9
      CBG12365.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG12365.1:c.21+48A>G
        Intron_number: 1/10
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP