WormBase Tree Display for Variation: WBVar00118461

WBVar00118461 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00118461
    Other_name: cbs53982
    HGVSg: chrI:g.8927930A>T
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2887d2
    Flanking_sequences: aagagatgccgccggttcttttactcatttagcacatcaattttctaatt aaaatatctcattcttctcactattttctcacctcttttgcggaaaatca
    Mapping_target: cb25.fpc2887d2
    Type_of_mutation: Substitution: T A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 1000
        TTTAAA AhaIII, DraI 500 361 139
        TGCA CviRI, HpyCH4V 759 241
        TCGA EsaBC3I, TaqI, TthHB8I 423 193 163 150 42 29
        CAC HindI 195 170 166 100 65 48 46 39 37 27 25 25 19 11 10 10 7
        TTAA MseI, Tru1I, Tru9I 242 185 138 125 119 87 69 35
        AATT Sse9I, TasI, Tsp509I, TspEI 263 171 139 119 88 58 55 47 42 10 8
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 586 414
        TTTAAA AhaIII, DraI 861 139
        TGCA CviRI, HpyCH4V 1000
        TCGA EsaBC3I, TaqI, TthHB8I 423 193 163 150 71
        CAC HindI 195 166 100 85 85 65 48 46 39 37 27 25 25 19 11 10 10 7
        TTAA MseI, Tru1I, Tru9I 242 185 138 125 118 88 69 35
        AATT Sse9I, TasI, Tsp509I, TspEI 263 171 139 88 73 58 55 47 46 42 10 8
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00033322
      WBGene00033324
    Transcript: CBG12363.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG12363.1:c.*682+134T>A
        Intron_number: 8/9
      CBG12365.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG12365.1:c.21+134T>A
        Intron_number: 1/10
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP