WormBase Tree Display for Variation: WBVar00122323
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WBVar00122323 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00122323 | ||||
Other_name | cbs57844 | |||||
cb57844 | Paper_evidence | WBPaper00055507 | ||||
HGVSg | chrI:g.13571952G>A | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc4022 | ||
Flanking_sequences | atctagtcatgtttatactcatttt | aagttctcaatgagtaaatttcaaa | ||||
Mapping_target | cb25.fpc4022 | |||||
Type_of_mutation | Substitution | G | A | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 389 199 142 67 60 55 39 20 19 10 | ||
TTTAAA | AhaIII, DraI | 746 142 112 | ||||
AGCT | AluI | 779 123 50 40 8 | ||||
TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 1000 | ||||
CTAG | BfaI, MaeI, XspI | 271 219 207 109 105 37 24 14 14 | ||||
CCNNNNNNNGG | Bsc4I, BseLI, BsiYI, BslI | 431 409 160 | ||||
GGCC | BshFI, BshI, BsuRI, HaeIII, PalI | 424 267 160 99 30 20 | ||||
CTNAG | BstDEI, DdeI | 431 335 89 87 58 | ||||
RGCY | CviJI, CviTI | 176 135 134 123 101 99 50 40 27 25 25 20 19 13 8 5 | ||||
GAATTC | EcoRI, FunII | 536 216 209 39 | ||||
TCGA | EsaBC3I, TaqI, TthHB8I | 376 315 203 106 | ||||
WGGCCW | HaeI | 424 267 180 99 30 | ||||
CAC | HindI | 184 162 103 102 96 80 64 45 41 32 24 20 16 13 8 8 2 | ||||
TCNNGA | Hpy178III, Hpy188III | 360 262 155 93 85 45 | ||||
TTAA | MseI, Tru1I, Tru9I | 708 142 111 39 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 185 146 103 99 89 67 60 53 41 40 25 20 15 14 10 10 9 7 7 | ||||
Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 389 199 142 67 60 55 39 20 20 9 | |||
TTTAAA | AhaIII, DraI | 501 245 142 112 | ||||
AGCT | AluI | 659 123 120 50 40 8 | ||||
TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 460 308 232 | ||||
CTAG | BfaI, MaeI, XspI | 295 219 207 109 105 37 14 14 | ||||
CCNNNNNNNGG | Bsc4I, BseLI, BsiYI, BslI | 591 409 | ||||
GGCC | BshFI, BshI, BsuRI, HaeIII, PalI | 584 297 99 20 | ||||
CTNAG | BstDEI, DdeI | 431 271 89 87 64 58 | ||||
RGCY | CviJI, CviTI | 134 134 123 120 101 99 56 50 40 28 25 25 20 19 13 8 5 | ||||
GAATTC | EcoRI, FunII | 536 425 39 | ||||
TCGA | EsaBC3I, TaqI, TthHB8I | 315 232 203 144 106 | ||||
WGGCCW | HaeI | 604 297 99 | ||||
CAC | HindI | 211 184 162 119 80 64 45 41 32 24 20 8 8 2 | ||||
TCNNGA | Hpy178III, Hpy188III | 323 299 248 85 45 | ||||
TTAA | MseI, Tru1I, Tru9I | 502 206 142 111 39 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 185 146 103 99 89 67 60 53 41 40 25 20 15 14 11 9 9 7 7 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00035657 | ||||
Transcript | CBG15358.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | CBG15358.1:c.295-326G>A | |||||
Intron_number | 4/10 | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |