Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00122323

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00122323EvidencePaper_evidenceWBPaper00030778
WBPaper00055507
NamePublic_nameWBVar00122323
Other_namecbs57844
cb57844Paper_evidenceWBPaper00055507
HGVSgchrI:g.13571952G>A
Sequence_detailsSMapS_parentSequencecb25.fpc4022
Flanking_sequencesatctagtcatgtttatactcattttaagttctcaatgagtaaatttcaaa
Mapping_targetcb25.fpc4022
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestRAATTYAcsI, ApoI, XapI389 199 142 67 60 55 39 20 19 10
TTTAAAAhaIII, DraI746 142 112
AGCTAluI779 123 50 40 8
TTCGAAAsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI1000
CTAGBfaI, MaeI, XspI271 219 207 109 105 37 24 14 14
CCNNNNNNNGGBsc4I, BseLI, BsiYI, BslI431 409 160
GGCCBshFI, BshI, BsuRI, HaeIII, PalI424 267 160 99 30 20
CTNAGBstDEI, DdeI431 335 89 87 58
RGCYCviJI, CviTI176 135 134 123 101 99 50 40 27 25 25 20 19 13 8 5
GAATTCEcoRI, FunII536 216 209 39
TCGAEsaBC3I, TaqI, TthHB8I376 315 203 106
WGGCCWHaeI424 267 180 99 30
CACHindI184 162 103 102 96 80 64 45 41 32 24 20 16 13 8 8 2
TCNNGAHpy178III, Hpy188III360 262 155 93 85 45
TTAAMseI, Tru1I, Tru9I708 142 111 39
AATTSse9I, TasI, Tsp509I, TspEI185 146 103 99 89 67 60 53 41 40 25 20 15 14 10 10 9 7 7
Polymorphic_strain_digestRAATTYAcsI, ApoI, XapI389 199 142 67 60 55 39 20 20 9
TTTAAAAhaIII, DraI501 245 142 112
AGCTAluI659 123 120 50 40 8
TTCGAAAsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI460 308 232
CTAGBfaI, MaeI, XspI295 219 207 109 105 37 14 14
CCNNNNNNNGGBsc4I, BseLI, BsiYI, BslI591 409
GGCCBshFI, BshI, BsuRI, HaeIII, PalI584 297 99 20
CTNAGBstDEI, DdeI431 271 89 87 64 58
RGCYCviJI, CviTI134 134 123 120 101 99 56 50 40 28 25 25 20 19 13 8 5
GAATTCEcoRI, FunII536 425 39
TCGAEsaBC3I, TaqI, TthHB8I315 232 203 144 106
WGGCCWHaeI604 297 99
CACHindI211 184 162 119 80 64 45 41 32 24 20 8 8 2
TCNNGAHpy178III, Hpy188III323 299 248 85 45
TTAAMseI, Tru1I, Tru9I502 206 142 111 39
AATTSse9I, TasI, Tsp509I, TspEI185 146 103 99 89 67 60 53 41 40 25 20 15 14 11 9 9 7 7
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
AffectsGeneWBGene00035657
TranscriptCBG15358.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG15358.1:c.295-326G>A
Intron_number4/10
ReferenceWBPaper00030778
WBPaper00055507
RemarkPredicted by: ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP