WormBase Tree Display for Variation: WBVar00124158

WBVar00124158 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00124158
    Other_name: cbs59679
    HGVSg: chrIII:g.7865674A>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4044a
    Flanking_sequences: gcgatcggtaagagatacaaaatcgtaacaattcattcaattataagttt gaagatttggtcgactccttcttctgggaactgtacttgcaacaatggct
    Mapping_target: cb25.fpc4044a
    Type_of_mutation: Substitution: T G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CAC HindI 216 173 173 151 101 90 62 21 13
        TCNGA Hpy188I 591 204 117 58 30
        TTAA MseI, Tru1I, Tru9I 436 231 122 79 41 33 32 22 4
        AATT Sse9I, TasI, Tsp509I, TspEI 177 160 114 113 107 101 99 59 33 23 9 5
      Polymorphic_strain_digest: CAC HindI 216 173 151 145 101 90 62 28 21 13
        TCNGA Hpy188I 580 204 117 58 30 11
        TTAA MseI, Tru1I, Tru9I 436 231 154 79 41 33 22 4
        AATT Sse9I, TasI, Tsp509I, TspEI 177 160 114 113 107 101 99 64 33 23 9
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00036487
    Transcript: CBG16594.1 VEP_consequence: splice_region_variant,intron_variant
        VEP_impact: LOW
        HGVSc: CBG16594.1:c.1044-5T>G
        Intron_number: 7/8
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP