WormBase Tree Display for Variation: WBVar00145758
expand all nodes | collapse all nodes | view schema
| WBVar00145758 | Name | Public_name | gk352 | |||||
|---|---|---|---|---|---|---|---|---|
| Other_name | CE51026:p.Ile5544HisfsTer8 | |||||||
| F45E4.3b.1:c.16629_18427del | ||||||||
| CE51009:p.Ile5544HisfsTer8 | ||||||||
| F45E4.3a.1:c.16629_18427del | ||||||||
| HGVSg | CHROMOSOME_IV:g.7608253_7610051del | |||||||
| Sequence_details | SMap | S_parent | Sequence | F45E4 | ||||
| Flanking_sequences | taatctgagagtgatcccacctccaattgc | ccacccaaagatcgattactcataaggttt | ||||||
| Mapping_target | F45E4 | |||||||
| Type_of_mutation | Deletion | |||||||
| PCR_product | gk352_external | |||||||
| gk352_internal | ||||||||
| SeqStatus | Sequenced | |||||||
| Variation_type | Allele | |||||||
| Origin | Species | Caenorhabditis elegans | ||||||
| Strain | WBStrain00035905 | |||||||
| Laboratory | VC | |||||||
| Person | WBPerson427 | |||||||
| KO_consortium_allele | ||||||||
| Status | Live | |||||||
| Affects | Gene | WBGene00018468 | ||||||
| Transcript | F45E4.3b.1 | VEP_consequence | frameshift_variant | |||||
| VEP_impact | HIGH | |||||||
| HGVSc | F45E4.3b.1:c.16629_18427del | |||||||
| HGVSp | CE51026:p.Ile5544HisfsTer8 | |||||||
| cDNA_position | 16629-18427 | |||||||
| CDS_position | 16629-18427 | |||||||
| Protein_position | 5543-6143 | |||||||
| Exon_number | 15/33 | |||||||
| Codon_change | gcGATATCACATCCAACTCCACCACATTCAGCAAAAACTGATACAGGATCCAGGCACAGTAGTGGTTCATCTGCACATTCTCAATTCGGATTTTCAACACCTTCTATTTCTGGATTCAAGATATTCTTTGATAAAGCCAAGACAGCTACAGAGACACTTGTTAAAGAGATAAAAGATGAAGTTATTGTGGAAGTTGATAAAGATAAAACTGAAACAAAACCAGAACCAAATGTTTCAAATGAATTGACGGCTGAAGAATTTGAACATATTAGAAGAATCAATGAAATGGCAGGAATCGATGAACCAATTCAACCTCCACCAATAGCTCAAGAAAGACGTAAATCAAGTGTTGTAAGTGGATTGAAGAACATGTTCGGAGTTGGTAAACACGACGAATCAGAGCTCACTACGGAAGAGAAGGAACATATTCGACAAATGTCATTAATGGCAGAGAAGATGGATGAAGAGATTCTCGATGAACAGTCTAAACCAAAATCTACATTTGGACTAAAGAATTTCTTCGGAAAAGCTACCCAGTCGGTCATGCATGCTACAGATTCTGTGATAAAGAACGTTCAAAATCAATCAAAGCAATCTCTTAGTGGTCTAACCCAAGAAGAGCTAGATAACATTGCACAGGCTACTGAAAGTGCTCAGCAAGAATCTAAGCAAGAGCTCACACAAGATGAAATAGATCACATTGCCAGAATTAATGCTATGGCAGCGGAAGACTTTGAACAACCCGCAGTTAATATGAATCAAGGATTGTCACAAGCAGAGAAAGATCATATCGCTCGTATTGAGGCTATGGCAGCGGATGATTCACAATCTAAAATCATTGTTCCTCCTCCTTCAATTATCCAAAAAGATATTGAACTTTCAATGGAAGAAATGGATCACATTGCTCGAATAGCTGCAATGGCTGACGAGGACTTTACACATCCTGTTAAAGGAGCTGTCGCGCCAATTTATGATGAAAATTATAGTAGGGACGATGGTGCAATTGATAGATTCCCAGCTTCGACAGCTACTCCAGTGTTTGCGCAGCCGTCTGAAATTGAACTTTCTGAAGAAGAGCGTGAACATATTTCCAGAATCGCTGCAATGGCTGAAGAAGATTTTAATACACCATACGTTTCAACACATCCAACACAGCAAATTGAAATAGAACTAACGGAAGAAGAAAAAGAACATATTGCAAGGATCGAGGCGATGGCTTCCGAAGATTTAAATGCGCCATCTCCCTTTATCCAACAAGAGCAACGAGTTGCGACAATGCCAGTGCCAATTAATTATCATGTTGAAGAACCAACTCTATCGCAAGAAGAAATTGATCACATTGCAAGAATAACAGCTATGGCTACTGAAGATAACACTGATCTACAAACTCTACCAACTCCTCAAGTTAAACAAAATGAACCGGAGCTCTCCCAAGAAGAAATAGATCACATTACTCGAATAGCTGCAATGGCAAATGAAGACTTTGGAATGTATCCTTCAATTGTTTCTGAACATCCTGCTCCAGTTGAATCTGAACTTACTCAAGAAGAACTTGATCATATCGCTAAGATCACAGGAATGGCATCTATGGACATCAGTACTCTACCACCTCCAACAGGAAAACCATCCGAGACATCACTTACTCAGGAAGAACTTGATCATATTGCTCGCATAGCTGAAATGGCATCAGCAGAATATGATGTTCCTGTAAAAATATTCGAACCACCAGAACTAACTCAAGAGGAACTTGATCATATAGCAAAGATTACTGCAATGGCTGCACAAGATGTCCAACTTCCTGcc/gccc | |||||||
| Amino_acid_change | AISHPTPPHSAKTDTGSRHSSGSSAHSQFGFSTPSISGFKIFFDKAKTATETLVKEIKDEVIVEVDKDKTETKPEPNVSNELTAEEFEHIRRINEMAGIDEPIQPPPIAQERRKSSVVSGLKNMFGVGKHDESELTTEEKEHIRQMSLMAEKMDEEILDEQSKPKSTFGLKNFFGKATQSVMHATDSVIKNVQNQSKQSLSGLTQEELDNIAQATESAQQESKQELTQDEIDHIARINAMAAEDFEQPAVNMNQGLSQAEKDHIARIEAMAADDSQSKIIVPPPSIIQKDIELSMEEMDHIARIAAMADEDFTHPVKGAVAPIYDENYSRDDGAIDRFPASTATPVFAQPSEIELSEEEREHISRIAAMAEEDFNTPYVSTHPTQQIEIELTEEEKEHIARIEAMASEDLNAPSPFIQQEQRVATMPVPINYHVEEPTLSQEEIDHIARITAMATEDNTDLQTLPTPQVKQNEPELSQEEIDHITRIAAMANEDFGMYPSIVSEHPAPVESELTQEELDHIAKITGMASMDISTLPPPTGKPSETSLTQEELDHIARIAEMASAEYDVPVKIFEPPELTQEELDHIAKITAMAAQDVQLPA/AX | |||||||
| F45E4.3a.1 | VEP_consequence | frameshift_variant | ||||||
| VEP_impact | HIGH | |||||||
| HGVSc | F45E4.3a.1:c.16629_18427del | |||||||
| HGVSp | CE51009:p.Ile5544HisfsTer8 | |||||||
| cDNA_position | 16629-18427 | |||||||
| CDS_position | 16629-18427 | |||||||
| Protein_position | 5543-6143 | |||||||
| Exon_number | 15/41 | |||||||
| Codon_change | gcGATATCACATCCAACTCCACCACATTCAGCAAAAACTGATACAGGATCCAGGCACAGTAGTGGTTCATCTGCACATTCTCAATTCGGATTTTCAACACCTTCTATTTCTGGATTCAAGATATTCTTTGATAAAGCCAAGACAGCTACAGAGACACTTGTTAAAGAGATAAAAGATGAAGTTATTGTGGAAGTTGATAAAGATAAAACTGAAACAAAACCAGAACCAAATGTTTCAAATGAATTGACGGCTGAAGAATTTGAACATATTAGAAGAATCAATGAAATGGCAGGAATCGATGAACCAATTCAACCTCCACCAATAGCTCAAGAAAGACGTAAATCAAGTGTTGTAAGTGGATTGAAGAACATGTTCGGAGTTGGTAAACACGACGAATCAGAGCTCACTACGGAAGAGAAGGAACATATTCGACAAATGTCATTAATGGCAGAGAAGATGGATGAAGAGATTCTCGATGAACAGTCTAAACCAAAATCTACATTTGGACTAAAGAATTTCTTCGGAAAAGCTACCCAGTCGGTCATGCATGCTACAGATTCTGTGATAAAGAACGTTCAAAATCAATCAAAGCAATCTCTTAGTGGTCTAACCCAAGAAGAGCTAGATAACATTGCACAGGCTACTGAAAGTGCTCAGCAAGAATCTAAGCAAGAGCTCACACAAGATGAAATAGATCACATTGCCAGAATTAATGCTATGGCAGCGGAAGACTTTGAACAACCCGCAGTTAATATGAATCAAGGATTGTCACAAGCAGAGAAAGATCATATCGCTCGTATTGAGGCTATGGCAGCGGATGATTCACAATCTAAAATCATTGTTCCTCCTCCTTCAATTATCCAAAAAGATATTGAACTTTCAATGGAAGAAATGGATCACATTGCTCGAATAGCTGCAATGGCTGACGAGGACTTTACACATCCTGTTAAAGGAGCTGTCGCGCCAATTTATGATGAAAATTATAGTAGGGACGATGGTGCAATTGATAGATTCCCAGCTTCGACAGCTACTCCAGTGTTTGCGCAGCCGTCTGAAATTGAACTTTCTGAAGAAGAGCGTGAACATATTTCCAGAATCGCTGCAATGGCTGAAGAAGATTTTAATACACCATACGTTTCAACACATCCAACACAGCAAATTGAAATAGAACTAACGGAAGAAGAAAAAGAACATATTGCAAGGATCGAGGCGATGGCTTCCGAAGATTTAAATGCGCCATCTCCCTTTATCCAACAAGAGCAACGAGTTGCGACAATGCCAGTGCCAATTAATTATCATGTTGAAGAACCAACTCTATCGCAAGAAGAAATTGATCACATTGCAAGAATAACAGCTATGGCTACTGAAGATAACACTGATCTACAAACTCTACCAACTCCTCAAGTTAAACAAAATGAACCGGAGCTCTCCCAAGAAGAAATAGATCACATTACTCGAATAGCTGCAATGGCAAATGAAGACTTTGGAATGTATCCTTCAATTGTTTCTGAACATCCTGCTCCAGTTGAATCTGAACTTACTCAAGAAGAACTTGATCATATCGCTAAGATCACAGGAATGGCATCTATGGACATCAGTACTCTACCACCTCCAACAGGAAAACCATCCGAGACATCACTTACTCAGGAAGAACTTGATCATATTGCTCGCATAGCTGAAATGGCATCAGCAGAATATGATGTTCCTGTAAAAATATTCGAACCACCAGAACTAACTCAAGAGGAACTTGATCATATAGCAAAGATTACTGCAATGGCTGCACAAGATGTCCAACTTCCTGcc/gccc | |||||||
| Amino_acid_change | AISHPTPPHSAKTDTGSRHSSGSSAHSQFGFSTPSISGFKIFFDKAKTATETLVKEIKDEVIVEVDKDKTETKPEPNVSNELTAEEFEHIRRINEMAGIDEPIQPPPIAQERRKSSVVSGLKNMFGVGKHDESELTTEEKEHIRQMSLMAEKMDEEILDEQSKPKSTFGLKNFFGKATQSVMHATDSVIKNVQNQSKQSLSGLTQEELDNIAQATESAQQESKQELTQDEIDHIARINAMAAEDFEQPAVNMNQGLSQAEKDHIARIEAMAADDSQSKIIVPPPSIIQKDIELSMEEMDHIARIAAMADEDFTHPVKGAVAPIYDENYSRDDGAIDRFPASTATPVFAQPSEIELSEEEREHISRIAAMAEEDFNTPYVSTHPTQQIEIELTEEEKEHIARIEAMASEDLNAPSPFIQQEQRVATMPVPINYHVEEPTLSQEEIDHIARITAMATEDNTDLQTLPTPQVKQNEPELSQEEIDHITRIAAMANEDFGMYPSIVSEHPAPVESELTQEELDHIAKITGMASMDISTLPPPTGKPSETSLTQEELDHIARIAEMASAEYDVPVKIFEPPELTQEELDHIAKITAMAAQDVQLPA/AX | |||||||
| Isolation | Mutagen | TMP/UV | ||||||
| Description | Phenotype | WBPhenotype:0000102 | Paper_evidence | WBPaper00053377 | ||||
| Curator_confirmed | WBPerson39938 | |||||||
| Phenotype_assay | Genotype | olaIs1 [tph-1p::mCherry; tph-1p::cat-1::gfp] | Paper_evidence | WBPaper00053377 | ||||
| Curator_confirmed | WBPerson39938 | |||||||
| Phenotype_not_observed | WBPhenotype:0000643 | Paper_evidence | WBPaper00053377 | |||||
| Curator_confirmed | WBPerson39938 | |||||||
| Reference | WBPaper00053377 | |||||||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | |||||
| Method | KO_consortium_allele |
