WormBase Tree Display for Variation: WBVar00180285
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| WBVar00180285 | Evidence | Paper_evidence | WBPaper00038208 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00180285 | |||
| Other_name | haw47561 | ||||
| haw146331 | |||||
| cewivar00198512 | |||||
| Y41C4A.4f.1:c.40+576A>G | |||||
| Y41C4A.4c.1:c.416-900A>G | |||||
| Y41C4A.4d.1:c.467-900A>G | |||||
| Y41C4A.4a.1:c.449-900A>G | |||||
| Y41C4A.4b.1:c.455-900A>G | |||||
| Y41C4A.4g.1:c.767-909A>G | |||||
| Y41C4A.4e.1:c.392-900A>G | |||||
| HGVSg | CHROMOSOME_III:g.11690393A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | Y41C4A | |
| Flanking_sequences | gccaaaactttaaccaaaaattgtg | aaaatctaaaattttttggagtgttttattatgatatttg | |||
| Mapping_target | Y41C4A | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | ||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00006629 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023192 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00024204 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00566196 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00000793 | |||
| Transcript | Y41C4A.4e.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y41C4A.4e.1:c.392-900A>G | ||||
| Intron_number | 5/8 | ||||
| Y41C4A.4g.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y41C4A.4g.1:c.767-909A>G | ||||
| Intron_number | 3/6 | ||||
| Y41C4A.4b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y41C4A.4b.1:c.455-900A>G | ||||
| Intron_number | 4/6 | ||||
| Y41C4A.4a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y41C4A.4a.1:c.449-900A>G | ||||
| Intron_number | 5/8 | ||||
| Y41C4A.4d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y41C4A.4d.1:c.467-900A>G | ||||
| Intron_number | 5/8 | ||||
| Y41C4A.4f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y41C4A.4f.1:c.40+576A>G | ||||
| Intron_number | 2/5 | ||||
| Y41C4A.4c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y41C4A.4c.1:c.416-900A>G | ||||
| Intron_number | 4/6 | ||||
| Reference | WBPaper00038208 | ||||
| Remark | [20081124 db] this Variation was previously named hw47561 | ||||
| Method | WGS_Hawaiian_Waterston |
