WormBase Tree Display for Variation: WBVar00247124
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| WBVar00247124 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00247124 | |||
| Other_name | snp_Y41C4A[8] | ||||
| Y41C4A.4g.1:c.468-499C>T | |||||
| Y41C4A.4d.1:c.168-499C>T | |||||
| Y41C4A.4b.1:c.150-499C>T | |||||
| Y41C4A.4a.1:c.150-499C>T | |||||
| Y41C4A.4e.1:c.93-499C>T | |||||
| Y41C4A.4c.1:c.117-499C>T | |||||
| HGVSg | CHROMOSOME_III:g.11684711C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y41C4A | |
| Flanking_sequences | aaatttgtggaaaatcggcacattg | cggaatttaaatttgtggaaaatcggcaaa | |||
| Mapping_target | Y41C4A | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| RFLP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| Analysis | SNP_Wicks | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00000793 | |||
| Transcript | Y41C4A.4e.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y41C4A.4e.1:c.93-499C>T | ||||
| Intron_number | 3/8 | ||||
| Y41C4A.4g.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y41C4A.4g.1:c.468-499C>T | ||||
| Intron_number | 1/6 | ||||
| Y41C4A.4b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y41C4A.4b.1:c.150-499C>T | ||||
| Intron_number | 2/6 | ||||
| Y41C4A.4a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y41C4A.4a.1:c.150-499C>T | ||||
| Intron_number | 3/8 | ||||
| Y41C4A.4d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y41C4A.4d.1:c.168-499C>T | ||||
| Intron_number | 3/8 | ||||
| Y41C4A.4c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y41C4A.4c.1:c.117-499C>T | ||||
| Intron_number | 2/6 | ||||
| Reference | WBPaper00004703 | ||||
| Remark | Predicted SNP: Psnp=0.9328 VarS=CT | ||||
| Enzymes. Bristol-specific: [Asp748I,Bco27I,BsaZI,Bse3DI,BseMI,BshMI,BsiSI,Bsp116I,Bsp1591II,Bsp47I,Bsp48I,Bsp5I,BsrDI,Bst40I,Bsu1192I,BsuFI,FinII,HapII,Hin2I,Hin5I,HpaII,HpyF43I,HpyVIII,MniII,MnoI,MspI,Pde137I,Pme35I,SecII,SfaGUI,Sth134I,Uba1128I,Uba1141I,Uba1267I,Uba1338I,Uba1355I,Uba1439I]. CB4856-specific [none]. | |||||
| [20040130 db] this Locus was previously named snp_Y41C4.8 | |||||
| [20040130 db] this Allele was previously named snp_Y41C4.8 | |||||
| [20090224 db] this Variation was previously named snp_Y41C4[8] | |||||
| [20090224 db] original Wicks name : Y41C4A:46218..47262@547 Psnp=0.9328 VarS=CT | |||||
| [20090224 db] original Wicks id : yy56f03.s1@483,t,47 | |||||
| [20090224 db] Snip-SNP | |||||
| Method | SNP_Wicks |
