WormBase Tree Display for Variation: WBVar00249428

WBVar00249428 Name: Public_name: tm380
    Other_name: C40C9.2.1:c.363-29_797delinsAATGGGGAAGCCATAAG
    HGVSg: CHROMOSOME_X:g.13644026_13645475delinsCTTATGGCTTCCCCATT
  Sequence_details: SMap: S_parent: Sequence: C40C9
    Flanking_sequences: aacgtaattttttcaccagcatccggaggt gcgctgaagtttgtattgtctagaaaataa
    Mapping_target: C40C9
    Source_location: 7 CHROMOSOME_X 13644025 13645476 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: CTTATGGCTTCCCCATT
      Deletion
    PCR_product: tm380_external
      tm380_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 380
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00200949
      WBGene00000048
      WBGene00202225
    Transcript: C40C9.15 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      C40C9.2.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C40C9.2.1:c.363-29_797delinsAATGGGGAAGCCATAAG
        cDNA_position: ?-927
        CDS_position: ?-797
        Protein_position: ?-266
        Intron_number: 4-7/14
        Exon_number: 5-8/15
      C40C9.16 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000681 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. J-L. Besereau to the National Bioresource Project of Japan: sensitive to nicotinic agonist DMPP. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 13076/13077-CTTATGGCTTCCCCATT-14526/14527 (1450 deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele