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WormBase Tree Display for Variation: WBVar00249888

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Name Class

WBVar00249888NamePublic_nametm863
Other_nameCE28078:p.Leu158_Pro302delinsPheTer
T09A5.3.1:c.474_906delinsCTGAAGC
HGVSgCHROMOSOME_II:g.7848445_7849069delinsGCTTCAG
Sequence_detailsSMapS_parentSequenceT09A5
Flanking_sequencestccaagtagaggtacagcttcagatgttgtaactgcaatatttcctgtatacttacagta
Mapping_targetT09A5
Source_location7CHROMOSOME_II78484447849070Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationInsertionGCTTCAG
Deletion
PCR_producttm863_external
tm863_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00007571
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq863
NBP_allele
StatusLive
AffectsGeneWBGene00000046
TranscriptT09A5.3.1 (11)
IsolationMutagenTMP/UV
GeneticsMapII
DescriptionPhenotype (12)
Phenotype_not_observedWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson48
RemarkClassified as homozygous viable by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson48
WBPhenotype:0000643Paper_evidenceWBPaper00041959
Curator_confirmedWBPerson557
RemarkAuthors refer to this as tn863, not tm863 in the paper.Paper_evidenceWBPaper00041959
Curator_confirmedWBPerson557
WBPhenotype:0000681Paper_evidenceWBPaper00027611
Curator_confirmedWBPerson712
RemarkScored as DMPP sensitive.Paper_evidenceWBPaper00027611
Curator_confirmedWBPerson712
Affected_byMoleculeWBMol:00000896Paper_evidenceWBPaper00027611
Curator_confirmedWBPerson712
WBPhenotype:0000964Person_evidenceWBPerson7743
Curator_confirmedWBPerson48
RemarkComment from Dr. J-L. Bessereau to the National Bioresource Project of Japan: sensitive to nicotinic agonist DMPP after backcross.Person_evidenceWBPerson7743
Curator_confirmedWBPerson48
WBPhenotype:0001468Paper_evidenceWBPaper00041959
Curator_confirmedWBPerson557
RemarkMutant worms exhibited a normal approach to a benzaldehyde stimulus. Authors refer to this as tn863, not tm863 in the paper.Paper_evidenceWBPaper00041959
Curator_confirmedWBPerson557
Phenotype_assayTreatmentWorms placed on chemotaxis plates spotted with 0.01% benzaldehyde.Paper_evidenceWBPaper00041959
Curator_confirmedWBPerson557
ReferenceWBPaper00041959
WBPaper00043908
WBPaper00027611
Remark16544/16545-GCTTCAG-17169/17170 (625 bp deletion + 7 bp insertion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele