WormBase Tree Display for Variation: WBVar00250121

WBVar00250121 Name: Public_name: tm1104
    Other_name: F11A6.1a.1:c.487_956+17del
      F11A6.1a.2:c.487_956+17del
    HGVSg: CHROMOSOME_I:g.11677017_11678257del
  Sequence_details: SMap: S_parent: Sequence: F11A6
    Flanking_sequences: atttttgaagaggatgatgatggtactcaa gaattgagccaaaatttacaatttcatcag
    Mapping_target: F11A6
    Source_location: 7 CHROMOSOME_I 11677016 11678258 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1104_external
      tm1104_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1104
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00002232
    Transcript: F11A6.1a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F11A6.1a.1:c.487_956+17del
        cDNA_position: 587-?
        CDS_position: 487-?
        Protein_position: 163-?
        Intron_number: 3-4/8
        Exon_number: 3-4/9
      F11A6.1a.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F11A6.1a.2:c.487_956+17del
        cDNA_position: 591-?
        CDS_position: 487-?
        Protein_position: 163-?
        Intron_number: 3-4/8
        Exon_number: 3-4/9
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
    Phenotype_not_observed: WBPhenotype:0002535 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. S. Shaham to the National Bioresource Project of Japan: no apparent defects in amphid dendrite structure. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark (2)
  Method: NBP_knockout_allele