WormBase Tree Display for Variation: WBVar00250145
expand all nodes | collapse all nodes | view schema
| WBVar00250145 | Name | Public_name | tm1128 | |||||
|---|---|---|---|---|---|---|---|---|
| HGVSg | CHROMOSOME_X:g.6160379_6160887del | |||||||
| Sequence_details | SMap | S_parent | Sequence | C34H3 | ||||
| Flanking_sequences | atagcaagcagcgccattttcctctgctgc | attttacaccacgcgtcatctatgaatttt | ||||||
| Mapping_target | C34H3 | |||||||
| Source_location | 7 | CHROMOSOME_X | 6160378 | 6160888 | Inferred_automatically | National_Bioresource_Project | ||
| Type_of_mutation | Deletion | |||||||
| PCR_product | tm1128_external | |||||||
| tm1128_internal | ||||||||
| SeqStatus | Sequenced | |||||||
| Variation_type | Allele | |||||||
| Origin | Species | Caenorhabditis elegans | ||||||
| Laboratory | FX | |||||||
| Author | Mitani S | |||||||
| DB_info | Database | National_Bioresource_Project | seq | 1128 | ||||
| NBP_allele | ||||||||
| Status | Live | |||||||
| Affects | Gene | WBGene00003846 | ||||||
| WBGene00197000 | ||||||||
| Transcript | C34H3.9 | VEP_consequence | transcript_ablation | |||||
| VEP_impact | HIGH | |||||||
| Exon_number | 1/1 | |||||||
| C34H3.2.1 | VEP_consequence | coding_sequence_variant,5_prime_UTR_variant | ||||||
| VEP_impact | MODIFIER | |||||||
| cDNA_position | ?-149 | |||||||
| CDS_position | ?-107 | |||||||
| Protein_position | ?-36 | |||||||
| Exon_number | 1-2/4 | |||||||
| Isolation | Mutagen | TMP/UV | ||||||
| Genetics | Map | X | ||||||
| Description | Phenotype | WBPhenotype:0000062 | Person_evidence | WBPerson7743 | ||||
| Curator_confirmed | WBPerson712 | |||||||
| Remark | Classified as lethal OR sterile by the National Bioresource Project of Japan. | Person_evidence | WBPerson7743 | |||||
| Curator_confirmed | WBPerson712 | |||||||
| Laboratory_evidence | FX | |||||||
| WBPhenotype:0000688 | Person_evidence | WBPerson7743 | ||||||
| Curator_confirmed | WBPerson712 | |||||||
| Remark | Classified as lethal OR sterile by the National Bioresource Project of Japan. | Person_evidence | WBPerson7743 | |||||
| Curator_confirmed | WBPerson712 | |||||||
| Laboratory_evidence | FX | |||||||
| Remark | 25983/25984-26492/26493 (509 bp deletion) | |||||||
| This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. | Paper_evidence | WBPaper00041807 | ||||||
| Method | NBP_knockout_allele |
