WormBase Tree Display for Variation: WBVar00250253

WBVar00250253 Name: Public_name: tm1245
    Other_name: T24B8.7a.1:c.319-101_1086-21del
      T24B8.7d.1:c.154-101_921-21del
      T24B8.7h.1:c.319-101_1086-21del
      T24B8.7e.1:c.154-101_921-21del
      T24B8.7f.1:c.154-101_921-21del
      T24B8.7c.1:c.154-101_921-21del
      T24B8.7g.1:c.319-101_1086-21del
      T24B8.7b.1:c.319-101_1086-21del
    HGVSg: CHROMOSOME_II:g.9051740_9052773del
  Sequence_details: SMap: S_parent: Sequence: T24B8
    Flanking_sequences: ttcgcgttctctataaaaaaaaattaattt cgtttgcctctactatttcaatttgctttg
    Mapping_target: T24B8
    Source_location: 7 CHROMOSOME_II 9051739 9052774 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1245_external
      tm1245_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1245
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00011980
    Transcript: T24B8.7c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T24B8.7c.1:c.154-101_921-21del
        Intron_number: 1-4/26
        Exon_number: 2-4/27
      T24B8.7b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T24B8.7b.1:c.319-101_1086-21del
        Intron_number: 3-6/28
        Exon_number: 4-6/29
      T24B8.7a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T24B8.7a.1:c.319-101_1086-21del
        Intron_number: 3-6/29
        Exon_number: 4-6/30
      T24B8.7d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T24B8.7d.1:c.154-101_921-21del
        Intron_number: 1-4/26
        Exon_number: 2-4/27
      T24B8.7f.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T24B8.7f.1:c.154-101_921-21del
        Intron_number: 1-4/13
        Exon_number: 2-4/14
      T24B8.7e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T24B8.7e.1:c.154-101_921-21del
        Intron_number: 1-4/14
        Exon_number: 2-4/15
      T24B8.7g.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T24B8.7g.1:c.319-101_1086-21del
        Intron_number: 3-6/15
        Exon_number: 4-6/16
      T24B8.7h.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T24B8.7h.1:c.319-101_1086-21del
        Intron_number: 3-6/15
        Exon_number: 4-6/16
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype: WBPhenotype:0000017 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. L. Dreier to the National Bioresource Project of Japan: Ric Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: IY
        Affected_by: Molecule: WBMol:00003650 Person_evidence: WBPerson7743
              Curator_confirmed: WBPerson712
    Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000436 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. L. Dreier to the National Bioresource Project of Japan: normal GLR-1::GFP localization Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: IY
  Remark: 1330/1331-2364/2365 (1034 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele