WormBase Tree Display for Variation: WBVar00250554

WBVar00250554 Name: Public_name: tm1568
    Other_name: C53C7.1a.1:c.120-223_325-81del
      C53C7.1b.1:c.120-223_325-81del
      C53C7.1a.2:c.120-223_325-81del
    HGVSg: CHROMOSOME_X:g.13020738_13021311del
  Sequence_details: SMap: S_parent: Sequence: C53C7
    Flanking_sequences: ttgaattgaaatcaataatctttcaaatcc ttaatttcgtttttagtggatgtatggcat
    Mapping_target: C53C7
    Source_location: 7 CHROMOSOME_X 13020737 13021312 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm1568_external
      tm1568_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 1568
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00008278
    Transcript: C53C7.1b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C53C7.1b.1:c.120-223_325-81del
        Intron_number: 3-4/10
        Exon_number: 4/11
      C53C7.1a.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C53C7.1a.2:c.120-223_325-81del
        Intron_number: 2-3/9
        Exon_number: 3/10
      C53C7.1a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C53C7.1a.1:c.120-223_325-81del
        Intron_number: 3-4/10
        Exon_number: 4/11
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype (17)
    Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000535 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. H. R. Horvitz: WT for gross morphology. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: MT
      WBPhenotype:0000643 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. H. R. Horvitz: WT for locomotion. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: MT
      WBPhenotype:0000676 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment from Dr. H. R. Horvitz: WT for growth rate. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: MT
  Reference: WBPaper00043908
  Remark: 2465/2466-3039/3040 (574 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele