WormBase Tree Display for Variation: WBVar00251044

WBVar00251044 Name: Public_name: tm2104
    Other_name: Y54G2A.35b.1:c.6_184-110delinsAGGCAACCGTACAGCA
      Y54G2A.35a.1:c.6_184-110delinsAGGCAACCGTACAGCA
    HGVSg: CHROMOSOME_IV:g.2960128_2960802delinsAGGCAACCGTACAGCA
  Sequence_details: SMap: S_parent: Sequence: Y54G2A
    Flanking_sequences: tcagaaaaattcgccgccacaaaaaatgat caggtaggcaaccgtacagcacattggaag
    Mapping_target: Y54G2A
    Source_location: 7 CHROMOSOME_IV 2960127 2960803 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: AGGCAACCGTACAGCA
      Deletion
    PCR_product: tm2104_external
      tm2104_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 2104
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00021897
    Transcript: Y54G2A.35b.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y54G2A.35b.1:c.6_184-110delinsAGGCAACCGTACAGCA
        cDNA_position: 31-?
        CDS_position: 6-?
        Protein_position: 2-?
        Intron_number: 2/6
        Exon_number: 2/7
      Y54G2A.35a.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y54G2A.35a.1:c.6_184-110delinsAGGCAACCGTACAGCA
        cDNA_position: 6-?
        CDS_position: 6-?
        Protein_position: 2-?
        Intron_number: 1/6
        Exon_number: 1/7
  Isolation: Mutagen: TMP/UV
  Genetics: Map: IV
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 209906/209907-AGGCAACCGTACAGCA-210581/210582 (675 bp deletion + 16 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele