WormBase Tree Display for Gene: WBGene00021897
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| WBGene00021897 | SMap | S_parent | Sequence | Y54G2A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ser-6 | Person_evidence | WBPerson3917 | |||||
| WBPerson1657 | |||||||||
| WBPerson32 | |||||||||
| Sequence_name | Y54G2A.35 | ||||||||
| Molecular_name | Y54G2A.35a | ||||||||
| Y54G2A.35a.1 | |||||||||
| CE31653 | |||||||||
| Y54G2A.35b | |||||||||
| CE48534 | |||||||||
| Y54G2A.35b.1 | |||||||||
| Other_name | CELE_Y54G2A.35 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | ser-6 | ||||||||
| DB_info | Database | AceView | gene | 4D731 | |||||
| WormQTL | gene | WBGene00021897 | |||||||
| WormFlux | gene | WBGene00021897 | |||||||
| NDB | locus_tag | CELE_Y54G2A.35 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021897|UniProtKB=Q8MXS7 | |||||||
| family | PTHR24247 | ||||||||
| NCBI | gene | 259560 | |||||||
| RefSeq | protein | NM_001307333.2 | |||||||
| NM_171297.4 | |||||||||
| TrEMBL | UniProtAcc | U4PLH7 | |||||||
| Q8MXS7 | |||||||||
| UniProt_GCRP | UniProtAcc | Q8MXS7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 28 Apr 2008 17:08:00 | WBPerson2970 | Name_change | CGC_name | ser-6 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ser | ||||||||
| Allele (96) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (22) | |||||||||
| Ortholog (34) | |||||||||
| Paralog (12) | |||||||||
| Structured_description | Concise_description | ser-6 encodes a G protein-coupled receptor that is a member of the C. elegans biogenic amine (dopamine, serotonin, octopamine and tyramine) receptor family; in C. elegans, SER-6 functions as part of a signaling pathway that mediates serotonin-induced fat reduction via transcriptional regulation of lipid oxidation genes; a ser-6::GFP promoter fusion is expressed in a subset of head and tail neurons. | Paper_evidence | WBPaper00024527 | |||||
| WBPaper00031915 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 05 Jun 2008 00:00:00 | ||||||||
| Automated_description | Enables octopamine receptor activity. Involved in positive regulation of fatty acid beta-oxidation by octopamine signaling pathway. Predicted to be located in dendrite. Expressed in intestine; neurons; and in male. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y54G2A.35a | |||||||
| Y54G2A.35b | |||||||||
| Corresponding_transcript | Y54G2A.35a.1 | ||||||||
| Y54G2A.35b.1 | |||||||||
| Other_sequence (13) | |||||||||
| Associated_feature | WBsf660009 | ||||||||
| WBsf660010 | |||||||||
| WBsf995829 | |||||||||
| WBsf995830 | |||||||||
| WBsf995831 | |||||||||
| WBsf1016986 | |||||||||
| WBsf1016987 | |||||||||
| WBsf228072 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00057468 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr10641 | ||||||||
| Expr11709 | |||||||||
| Expr12149 | |||||||||
| Expr14336 | |||||||||
| Expr1013777 | |||||||||
| Expr1160898 | |||||||||
| Expr2015751 | |||||||||
| Expr2033984 | |||||||||
| Drives_construct | WBCnstr00017415 | ||||||||
| WBCnstr00019421 | |||||||||
| WBCnstr00020287 | |||||||||
| WBCnstr00024412 | |||||||||
| Construct_product | WBCnstr00017415 | ||||||||
| WBCnstr00024412 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (85) | |||||||||
| Interaction | WBInteraction000520736 | ||||||||
| WBInteraction000520737 | |||||||||
| Map_info | Map | IV | Position | -6.67896 | Error | 0.006989 | |||
| Positive | Positive_clone | Y54G2A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (22) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
