WormBase Tree Display for Variation: WBVar00251247

WBVar00251247 Name: Public_name: tm2349
    Other_name: Y57A10A.31.1:c.514_774del
      CE43429:p.Asn172_Tyr258del
    HGVSg: CHROMOSOME_II:g.12292028_12292288del
  Sequence_details: SMap: S_parent: Sequence: Y57A10A
    Flanking_sequences: aagcgtcgctgcgaatacctcaccttcaac gagagacttttgagatgtccgctacgtttc
    Mapping_target: Y57A10A
    Source_location: 7 CHROMOSOME_II 12292027 12292289 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm2349_external
      tm2349_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 2349
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00013270
    Transcript: Y57A10A.31.1 VEP_consequence: inframe_deletion
        VEP_impact: MODERATE
        HGVSc: Y57A10A.31.1:c.514_774del
        HGVSp: CE43429:p.Asn172_Tyr258del
        cDNA_position: 534-794
        CDS_position: 514-774
        Protein_position: 172-258
        Exon_number: 5/11
        Codon_change: AACACGCCTACCGCCTACCTACTCATCGACTCGGATGGCGACCCAGAATACACAAAGAACATCATCCGCCGAAAGCTGGGCTCCGCCGCTGCTCCGTCTCCACCGATTCTACTCGCCGCGCCGAACAGTGGCTACGCGATTCGATTCCGACACGGTGAAGAAATGCCGACGCTCATTCAAAAGTCATCCGAGTCGCAGTTTGCGCTGGTTTTCGACGAAAAGTACACGGAATTCACGAAATGCTCGGCTCGTGTGTTCTAC/-
        Amino_acid_change: NTPTAYLLIDSDGDPEYTKNIIRRKLGSAAAPSPPILLAAPNSGYAIRFRHGEEMPTLIQKSSESQFALVFDEKYTEFTKCSARVFY/-
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson48
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson48
            Laboratory_evidence: FX
  Remark: 155657/155658-155918/155919 (261 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele