WormBase Tree Display for Variation: WBVar00251665
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WBVar00251665 | Name | Public_name | tm2841 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | CE07978:p.Leu103AlafsTer28 | |||||||
C06G3.2.1:c.306_789del | ||||||||
HGVSg | CHROMOSOME_IV:g.7040563_7041046del | |||||||
Sequence_details | SMap | S_parent | Sequence | C06G3 | ||||
Flanking_sequences | tggtccttgcgattcatggactgaccaaga | ggccgttgcatccgtcttcttgccgatcct | ||||||
Mapping_target | C06G3 | |||||||
Source_location | 7 | CHROMOSOME_IV | 7040562 | 7041047 | Inferred_automatically | National_Bioresource_Project | ||
Type_of_mutation | Deletion | |||||||
PCR_product | tm2841_external | |||||||
tm2841_internal | ||||||||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Laboratory | FX | |||||||
Author | Mitani S | |||||||
DB_info | Database | National_Bioresource_Project | seq | 2841 | ||||
NBP_allele | ||||||||
Status | Live | |||||||
Affects | Gene | WBGene00002228 | ||||||
Transcript | C06G3.2.1 | VEP_consequence | frameshift_variant | |||||
VEP_impact | HIGH | |||||||
HGVSc | C06G3.2.1:c.306_789del | |||||||
HGVSp | CE07978:p.Leu103AlafsTer28 | |||||||
cDNA_position | 307-790 | |||||||
CDS_position | 306-789 | |||||||
Protein_position | 102-263 | |||||||
Exon_number | 3/9 | |||||||
Codon_change | gaACTTATGGGGCTCATCCCTCGATCAGTGGAACACGTTTTCCAGCATCTGGACACGAAGGCTAAAGAGTGTCAAAAGTTGACGTTCTCCGTTTCTGTTGAGTTTGTTGAACTCTACAACGAAGTCATCTACGACCTCTTGAATGCGAAGAACAAAGTCCAACTCAGAGATTCGGGAAAGGACATTCAGCTTGTTGGAGCCTTGTCGAAAAACGTTGATAACCCGCTCGACTTGATGCATTTGGTCCAAAAAGGTTGGCAGGAAAGAAGCACTGGCTCGACTGCAATGAATGCCGAATCGTCAAGATCACACGCGCTGCTCATCATCAGGATCAAAACGCAGGAGCGAACAGGAGAGCTAGTCAAGGAAAGGTCATCTATCCTGAACCTTGTGGACTTGGCGGGATCGGAGCGTCAGACGCATACAAAATCAAGCGGAGATCGACTGAAAGAAGCGACAAATATCAACTCATCTCTGACAGTGCTA/ga | |||||||
Amino_acid_change | ELMGLIPRSVEHVFQHLDTKAKECQKLTFSVSVEFVELYNEVIYDLLNAKNKVQLRDSGKDIQLVGALSKNVDNPLDLMHLVQKGWQERSTGSTAMNAESSRSHALLIIRIKTQERTGELVKERSSILNLVDLAGSERQTHTKSSGDRLKEATNINSSLTVL/X | |||||||
Isolation | Mutagen | TMP/UV | ||||||
Genetics | Map | IV | ||||||
Description | Phenotype | WBPhenotype:0000052 | Person_evidence | WBPerson7743 | ||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Comments to the National Bioresource Project of Japan: Dr. I. Mori: maternal effect embryonic lethal. | Person_evidence | WBPerson7743 | |||||
Curator_confirmed | WBPerson712 | |||||||
Laboratory_evidence | IK | |||||||
WBPhenotype:0000062 | Person_evidence | WBPerson7743 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Classified as lethal OR sterile by the National Bioresource Project of Japan. Originally classified as homozygous viable by the NBP. | Person_evidence | WBPerson7743 | |||||
Curator_confirmed | WBPerson712 | |||||||
Laboratory_evidence | FX | |||||||
WBPhenotype:0000478 | Person_evidence | WBPerson7743 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Comments to the National Bioresource Project of Japan: Dr. I. Mori: weakly thermotaxis abnormal when raised at 20C, but normal thermotaxis when raised at 17C and 23C. | Person_evidence | WBPerson7743 | |||||
Curator_confirmed | WBPerson712 | |||||||
Laboratory_evidence | IK | |||||||
WBPhenotype:0000688 | Person_evidence | WBPerson7743 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Classified as lethal OR sterile by the National Bioresource Project of Japan. | Person_evidence | WBPerson7743 | |||||
Curator_confirmed | WBPerson712 | |||||||
Laboratory_evidence | FX | |||||||
Phenotype_not_observed | WBPhenotype:0001225 | Person_evidence | WBPerson7743 | |||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Comments to the National Bioresource Project of Japan: Dr. H. Sawa: not Psa. | Person_evidence | WBPerson7743 | |||||
Curator_confirmed | WBPerson712 | |||||||
Laboratory_evidence | HS | |||||||
Remark | 28622/28623-29106/29107 (484 bp deletion) | |||||||
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. | Paper_evidence | WBPaper00041807 | ||||||
Method | NBP_knockout_allele |