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WormBase Tree Display for Variation: WBVar00251665

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Name Class

WBVar00251665NamePublic_nametm2841
Other_nameCE07978:p.Leu103AlafsTer28
C06G3.2.1:c.306_789del
HGVSgCHROMOSOME_IV:g.7040563_7041046del
Sequence_detailsSMapS_parentSequenceC06G3
Flanking_sequencestggtccttgcgattcatggactgaccaagaggccgttgcatccgtcttcttgccgatcct
Mapping_targetC06G3
Source_location7CHROMOSOME_IV70405627041047Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm2841_external
tm2841_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq2841
NBP_allele
StatusLive
AffectsGeneWBGene00002228
TranscriptC06G3.2.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScC06G3.2.1:c.306_789del
HGVSpCE07978:p.Leu103AlafsTer28
cDNA_position307-790
CDS_position306-789
Protein_position102-263
Exon_number3/9
Codon_changegaACTTATGGGGCTCATCCCTCGATCAGTGGAACACGTTTTCCAGCATCTGGACACGAAGGCTAAAGAGTGTCAAAAGTTGACGTTCTCCGTTTCTGTTGAGTTTGTTGAACTCTACAACGAAGTCATCTACGACCTCTTGAATGCGAAGAACAAAGTCCAACTCAGAGATTCGGGAAAGGACATTCAGCTTGTTGGAGCCTTGTCGAAAAACGTTGATAACCCGCTCGACTTGATGCATTTGGTCCAAAAAGGTTGGCAGGAAAGAAGCACTGGCTCGACTGCAATGAATGCCGAATCGTCAAGATCACACGCGCTGCTCATCATCAGGATCAAAACGCAGGAGCGAACAGGAGAGCTAGTCAAGGAAAGGTCATCTATCCTGAACCTTGTGGACTTGGCGGGATCGGAGCGTCAGACGCATACAAAATCAAGCGGAGATCGACTGAAAGAAGCGACAAATATCAACTCATCTCTGACAGTGCTA/ga
Amino_acid_changeELMGLIPRSVEHVFQHLDTKAKECQKLTFSVSVEFVELYNEVIYDLLNAKNKVQLRDSGKDIQLVGALSKNVDNPLDLMHLVQKGWQERSTGSTAMNAESSRSHALLIIRIKTQERTGELVKERSSILNLVDLAGSERQTHTKSSGDRLKEATNINSSLTVL/X
IsolationMutagenTMP/UV
GeneticsMapIV
DescriptionPhenotypeWBPhenotype:0000052Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComments to the National Bioresource Project of Japan: Dr. I. Mori: maternal effect embryonic lethal.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceIK
WBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal OR sterile by the National Bioresource Project of Japan. Originally classified as homozygous viable by the NBP.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceFX
WBPhenotype:0000478Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComments to the National Bioresource Project of Japan: Dr. I. Mori: weakly thermotaxis abnormal when raised at 20C, but normal thermotaxis when raised at 17C and 23C.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceIK
WBPhenotype:0000688Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkClassified as lethal OR sterile by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceFX
Phenotype_not_observedWBPhenotype:0001225Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
RemarkComments to the National Bioresource Project of Japan: Dr. H. Sawa: not Psa.Person_evidenceWBPerson7743
Curator_confirmedWBPerson712
Laboratory_evidenceHS
Remark28622/28623-29106/29107 (484 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele