WormBase Tree Display for Variation: WBVar00251834
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WBVar00251834 | Name | Public_name | tm3051 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | CE24379:p.Lys21_Ter216delextTer? | |||||||
Y48A6B.11c.1:c.60_647del | ||||||||
Y48A6B.11a.1:c.60_647del | ||||||||
CE54304:p.Lys21_Ter216delextTer? | ||||||||
HGVSg | CHROMOSOME_III:g.11063615_11064401del | |||||||
Sequence_details | SMap | S_parent | Sequence | Y48A6B | ||||
Flanking_sequences | tttcaagtcgtggctcgcaaaaaacgacga | gtcgcctttggtgaaaaaaaccacggaaac | ||||||
Mapping_target | Y48A6B | |||||||
Source_location | 7 | CHROMOSOME_III | 11063614 | 11064402 | Inferred_automatically | National_Bioresource_Project | ||
Type_of_mutation | Deletion | |||||||
PCR_product | tm3051_external | |||||||
tm3051_internal | ||||||||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Laboratory | FX | |||||||
Author | Mitani S | |||||||
DB_info | Database | National_Bioresource_Project | seq | 3051 | ||||
NBP_allele | ||||||||
Status | Live | |||||||
Affects | Gene | WBGene00012972 | ||||||
Transcript | Y48A6B.11a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant | |||||
VEP_impact | HIGH | |||||||
HGVSc | Y48A6B.11a.1:c.60_647del | |||||||
HGVSp | CE24379:p.Lys21_Ter216delextTer? | |||||||
cDNA_position | 137-724 | |||||||
CDS_position | 60-647 | |||||||
Protein_position | 20-216 | |||||||
Intron_number | 2-4/10 | |||||||
Exon_number | 2-5/11 | |||||||
Codon_change | gaAAAACCCGCGAAAAGTGTGCTCCTCGAGCCGAAATATCGCGATCACCACGAAAAAATAAGGTAAGCAGGGGGAAATTCCCCATGGCAACCATTTATTTATTTTCTGAGTTTCAGAAACAAGGAAAACATGGAGGAAGGCGAGAAGCCGGTTTTTGTATCAATGGGTAGGTTTTCTTTGGGAAAAAATTGGGGAAAAATGAGGAAAAATGGTTTTTTTGAAATTTTTTTGTTAATTTAAAAAATTTTTTAAATTTCCAGCAAACCCCCAACCAACACGAGAAGACTACGAACGTTACGACGAAGATCGTCGGCTTAAAGATAAAGCTCGTGATCTACGAATCGCCCGCCGCCGCAACTCCGCAACCCCAGAAGCCTCCCCGTCCAGCGATCAATACTTCACACCGGAGCCCGCCGATGACGAATTTGTCACTCCATCCACGTCGAAAAAGTCACAAAAGCCACGTAGCAGTGATGCGACGCCGGTGTCTTCAAAACCGCCAAGATATTGTAATTTTTTGAATTTCTTTCAAAAAAAAACCTAATTTTCATAATTTTCAGTGCCAAGAACCCCGTTATCAGAGCAATACACGTCTTGTCTGAGCCGGAAAATGGAGGAAAACTTTTCAAGAATGCAGGAGCTCATGATCTCCGGCCACTCACCCCATGAAGCCCGTCAGCAGACGATTCAGGAGAGCTCGGAGCAGCTGGAGCCCAGAGCCAAAGTGACACGTAGCTCATCCCAACCGCCACCGATTGACACTTTGAAGCCGCGTGTGCCACGTATTGAg/gag | |||||||
Amino_acid_change | EKPAKSVLLEPKYRDHHEKIR*AGGNSPWQPFIYFLSFRNKENMEEGEKPVFVSMGRFSLGKNWGKMRKNGFFEIFLLI*KIF*ISSKPPTNTRRLRTLRRRSSA*R*SS*STNRPPPQLRNPRSLPVQRSILHTGARR*RICHSIHVEKVTKAT*Q*CDAGVFKTAKIL*FFEFLSKKNLIFIIFSAKNPVIRAIHVLSEPENGGKLFKNAGAHDLRPLTP*SPSADDSGELGAAGAQSQSDT*LIPTATD*HFEAACATY*X/E | |||||||
Y48A6B.11c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,stop_lost,inframe_deletion,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | Y48A6B.11c.1:c.60_647del | |||||||
HGVSp | CE54304:p.Lys21_Ter216delextTer? | |||||||
cDNA_position | 137-724 | |||||||
CDS_position | 60-647 | |||||||
Protein_position | 20-216 | |||||||
Intron_number | 2-4/10 | |||||||
Exon_number | 2-5/11 | |||||||
Codon_change | gaAAAACCCGCGAAAAGTGTGCTCCTCGAGCCGAAATATCGCGATCACCACGAAAAAATAAGGTAAGCAGGGGGAAATTCCCCATGGCAACCATTTATTTATTTTCTGAGTTTCAGAAACAAGGAAAACATGGAGGAAGGCGAGAAGCCGGTTTTTGTATCAATGGGTAGGTTTTCTTTGGGAAAAAATTGGGGAAAAATGAGGAAAAATGGTTTTTTTGAAATTTTTTTGTTAATTTAAAAAATTTTTTAAATTTCCAGCAAACCCCCAACCAACACGAGAAGACTACGAACGTTACGACGAAGATCGTCGGCTTAAAGATAAAGCTCGTGATCTACGAATCGCCCGCCGCCGCAACTCCGCAACCCCAGAAGCCTCCCCGTCCAGCGATCAATACTTCACACCGGAGCCCGCCGATGACGAATTTGTCACTCCATCCACGTCGAAAAAGTCACAAAAGCCACGTAGCAGTGATGCGACGCCGGTGTCTTCAAAACCGCCAAGATATTGTAATTTTTTGAATTTCTTTCAAAAAAAAACCTAATTTTCATAATTTTCAGTGCCAAGAACCCCGTTATCAGAGCAATACACGTCTTGTCTGAGCCGGAAAATGGAGGAAAACTTTTCAAGAATGCAGGAGCTCATGATCTCCGGCCACTCACCCCATGAAGCCCGTCAGCAGACGATTCAGGAGAGCTCGGAGCAGCTGGAGCCCAGAGCCAAAGTGACACGTAGCTCATCCCAACCGCCACCGATTGACACTTTGAAGCCGCGTGTGCCACGTATTGAg/gag | |||||||
Amino_acid_change | EKPAKSVLLEPKYRDHHEKIR*AGGNSPWQPFIYFLSFRNKENMEEGEKPVFVSMGRFSLGKNWGKMRKNGFFEIFLLI*KIF*ISSKPPTNTRRLRTLRRRSSA*R*SS*STNRPPPQLRNPRSLPVQRSILHTGARR*RICHSIHVEKVTKAT*Q*CDAGVFKTAKIL*FFEFLSKKNLIFIIFSAKNPVIRAIHVLSEPENGGKLFKNAGAHDLRPLTP*SPSADDSGELGAAGAQSQSDT*LIPTATD*HFEAACATY*X/E | |||||||
Isolation | Mutagen | TMP/UV | ||||||
Genetics | Map | III | ||||||
Description | Phenotype_not_observed | WBPhenotype:0000062 | Person_evidence | WBPerson7743 | ||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Classified as homozygous viable by the National Bioresource Project of Japan | Person_evidence | WBPerson7743 | |||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0000643 | Person_evidence | WBPerson7743 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Comment to the National Bioresource Project from Dr E.T. Kipreos: normal locomotion. | Person_evidence | WBPerson7743 | |||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0000688 | Person_evidence | WBPerson7743 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Comment to the National Bioresource Project from Dr E.T. Kipreos: fertile. | Person_evidence | WBPerson7743 | |||||
Curator_confirmed | WBPerson712 | |||||||
Remark | 73470/73471-74257/74258 (787 bp deletion) | |||||||
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. | Paper_evidence | WBPaper00041807 | ||||||
Method | NBP_knockout_allele |