WormBase Tree Display for Variation: WBVar00251892

WBVar00251892 Name: Public_name: tm3116
    Other_name: C05D11.7a.1:c.344_760+6del
      C05D11.7b.1:c.344_760+6del
    HGVSg: CHROMOSOME_III:g.6418195_6418617del
  Sequence_details: SMap: S_parent: Sequence: C05D11
    Flanking_sequences: ttaaatattagaaaaatatggttcgaataa gacgtccggtgcacctgcaaaaataagtgt
    Mapping_target: C05D11
    Source_location: 7 CHROMOSOME_III 6418194 6418618 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm3116_external
      tm3116_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 3116
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00015484
    Transcript: C05D11.7a.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C05D11.7a.1:c.344_760+6del
        cDNA_position: 347-?
        CDS_position: 344-?
        Protein_position: 115-?
        Intron_number: 3/9
        Exon_number: 3/10
      C05D11.7b.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C05D11.7b.1:c.344_760+6del
        cDNA_position: 349-?
        CDS_position: 344-?
        Protein_position: 115-?
        Intron_number: 3/8
        Exon_number: 3/9
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 15425/15426-15848/15849 (423 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele