WormBase Tree Display for Variation: WBVar00252542

WBVar00252542 Name: Public_name: tm3980
    Other_name: F43G6.6.1:c.360-29_836del
    HGVSg: CHROMOSOME_II:g.11807250_11807803del
  Sequence_details: SMap: S_parent: Sequence: F43G6
    Flanking_sequences: cacctcttgcctcttgcctacttatgtgcc tgactttcatgtagactttggtggcaccag
    Mapping_target: F43G6
    Source_location: 7 CHROMOSOME_II 11807249 11807804 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm3980_external
      tm3980_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 3980
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00005013
    Transcript: F43G6.6.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F43G6.6.1:c.360-29_836del
        cDNA_position: ?-849
        CDS_position: ?-836
        Protein_position: ?-279
        Intron_number: 3-4/8
        Exon_number: 4-5/9
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype: WBPhenotype:0002436 Paper_evidence: WBPaper00046626
        Curator_confirmed: WBPerson338
        Remark: hypersensitive to DNA damage Paper_evidence: WBPaper00046626
            Curator_confirmed: WBPerson338
    Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000643 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the National Bioresource Project of Japan from Dr. A. Salcini: non-Unc. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: ZR
  Reference: WBPaper00046626
  Remark: 29933/29934-30487/30488 (554 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele