WormBase Tree Display for Variation: WBVar00252825

WBVar00252825 Name: Public_name: tm4320
    Other_name: H37N21.1.1:c.1411_1599-219delinsT
    HGVSg: CHROMOSOME_I:g.7141252_7141795delinsA
  Sequence_details: SMap: S_parent: Sequence: K10D3
    Flanking_sequences: ttcatagttttccgataaaaatatatttatg ttcaccgattttcttatcaactgcttcagg
    Mapping_target: K10D3
    Source_location: 7 CHROMOSOME_I 7171929 7172474 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: A
      Deletion: tatttgaaaaatatataatatacaaagttagtaactttcgttcaaacttctacaaaattttcatcaaaatttcatagtttttatcttggttttgtccaaatttaaattgttgtacttttatatttattttttaaatatttaaacttttcatcaaaaaactatgaaaagtctattgtaattccgaagcaaatacgttttaaaactacagtactctttaaaggcgcgcgccttttcgcatttaacattaaatttttcgtgtcgagacccgaatcatcaaatttcgggtcttatttaaaattctatcaggaaagggtgaactgattcaggaagtatactttgaaagaaaagaaacgtactcattttcaatatgcacattgatctccaaaatgtgtctattttctaaccgcatatctctctccccatttggttctccttcttcttccggagtcggtgatccagcatcacgcccatttgatgatcctattgtaacatttgctccattgacttcaacttcgactttactcgttgattccgtactcgtaac Curator_confirmed: WBPerson1983
    PCR_product: tm4320_external
      tm4320_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 4320
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00010427
    Transcript: H37N21.1.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: H37N21.1.1:c.1411_1599-219delinsT
        cDNA_position: 1568-?
        CDS_position: 1411-?
        Protein_position: 471-?
        Intron_number: 12/15
        Exon_number: 12/16
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 26503/26504-A-27047/27048 (544 bp deletion + 1 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
    Old Mapping_target H37N21 updated based on the VEP analysis pipeline to K07G5.
    Changing mapping from acaggtcttaatgcacaagttgaacttcat catttatttttttatagttgtttctaacca updating to match the coordinates (Z75545.1:26503/26504-A-27047/27048 (544 bp deletion + 1 bp insertion) Target change from K07G5 -> K10D3
  Method: NBP_knockout_allele