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WormBase Tree Display for Variation: WBVar00252873

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Name Class

WBVar00252873NamePublic_nametm4375
Other_nameB0457.1b.1:c.1203_1603del
B0457.1a.1:c.1209_1609del
CE02945:p.Asn403LysfsTer9
CE32789:p.Asn401LysfsTer9
HGVSgCHROMOSOME_II:g.8904725_8905125del
Sequence_detailsSMapS_parentSequenceB0457
Flanking_sequencestatggaatgggcagaatgttgataatgtaatgtacgaggacacgatctgaatgaaatcga
Mapping_targetB0457
Source_location7CHROMOSOME_II89047238905127Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationInsertionAA
Deletion
PCR_producttm4375_external
tm4375_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq4375
NBP_allele
StatusLive
AffectsGeneWBGene00002251
TranscriptB0457.1b.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScB0457.1b.1:c.1203_1603del
HGVSpCE32789:p.Asn401LysfsTer9
cDNA_position1240-1642
CDS_position1202-1604
Protein_position401-535
Exon_number6/10
Codon_changeaATATTCCACGAGATGCTATATTGAAGATCAACAAAGACGAGACTCAAGTATTTTTCTCTTCTTTTGATAATCTCGGAGCACAAATGACACCTTCTGATGTTACTGTAGCTATCGCTGGAACTGATCAAACTGAAGTTAGAAAACGGCGCGTCGTCTCAAGAATTGTTGGAGCATCTTTGATTGAAAATGGAAAAGAGAGACGAGTTGAGAATCTGACACAACCAGTTCGGATTACATTCTATCACAAAGAATCGTCAGTCCGTCATTTGAGCAATCCGACGTGTGTCTGGTGGAATCATCATGAACTGAAATGGAAACCTTCTGGATGTAAACTCAGTTATCATAATAAGACAATGACGTCATGTGACTGTACTCATCTCACACATTTTGCTGTTTTGATGGAt/aAAt
Amino_acid_changeNIPRDAILKINKDETQVFFSSFDNLGAQMTPSDVTVAIAGTDQTEVRKRRVVSRIVGASLIENGKERRVENLTQPVRITFYHKESSVRHLSNPTCVWWNHHELKWKPSGCKLSYHNKTMTSCDCTHLTHFAVLMD/KX
B0457.1a.1VEP_consequenceframeshift_variant
VEP_impactHIGH
HGVScB0457.1a.1:c.1209_1609del
HGVSpCE02945:p.Asn403LysfsTer9
cDNA_position1246-1648
CDS_position1208-1610
Protein_position403-537
Exon_number6/10
Codon_changeaATATTCCACGAGATGCTATATTGAAGATCAACAAAGACGAGACTCAAGTATTTTTCTCTTCTTTTGATAATCTCGGAGCACAAATGACACCTTCTGATGTTACTGTAGCTATCGCTGGAACTGATCAAACTGAAGTTAGAAAACGGCGCGTCGTCTCAAGAATTGTTGGAGCATCTTTGATTGAAAATGGAAAAGAGAGACGAGTTGAGAATCTGACACAACCAGTTCGGATTACATTCTATCACAAAGAATCGTCAGTCCGTCATTTGAGCAATCCGACGTGTGTCTGGTGGAATCATCATGAACTGAAATGGAAACCTTCTGGATGTAAACTCAGTTATCATAATAAGACAATGACGTCATGTGACTGTACTCATCTCACACATTTTGCTGTTTTGATGGAt/aAAt
Amino_acid_changeNIPRDAILKINKDETQVFFSSFDNLGAQMTPSDVTVAIAGTDQTEVRKRRVVSRIVGASLIENGKERRVENLTQPVRITFYHKESSVRHLSNPTCVWWNHHELKWKPSGCKLSYHNKTMTSCDCTHLTHFAVLMD/KX
IsolationMutagenTMP/UV
GeneticsMapII
DescriptionPhenotypeWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson2021
RemarkClassified as lethal OR sterile by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson2021
WBPhenotype:0000688Person_evidenceWBPerson7743
Curator_confirmedWBPerson2021
RemarkClassified as lethal OR sterile by the National Bioresource Project of Japan.Person_evidenceWBPerson7743
Curator_confirmedWBPerson2021
Remark19446/19447-AA-19849/19850 (403 bp deletion + 2 bp insertion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele