WormBase Tree Display for Variation: WBVar00296649
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| WBVar00296649 | Name | Public_name | ok3718 | ||
|---|---|---|---|---|---|
| HGVSg | CHROMOSOME_IV:g.14083498_14084015delinsTT | ||||
| Sequence_details | SMap | S_parent | Sequence | F52B11 | |
| Flanking_sequences | aatgtattattttccattttccgaattttt | cggattcaagggcaccgaaccgtatccagt | |||
| Mapping_target | F52B11 | ||||
| Type_of_mutation | Insertion | TT | |||
| Deletion | |||||
| PCR_product | ok3718_external | ||||
| ok3718_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00037648 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00009925 | |||
| WBGene00009924 | |||||
| Transcript | F52B11.1a.1 | VEP_consequence | splice_acceptor_variant,3_prime_UTR_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| Intron_number | 8/8 | ||||
| Exon_number | 9/9 | ||||
| F52B11.2b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-152 | ||||
| CDS_position | ?-152 | ||||
| Protein_position | ?-51 | ||||
| Intron_number | 1/1 | ||||
| Exon_number | 1-2/2 | ||||
| F52B11.1a.2 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| cDNA_position | 2016-? | ||||
| Exon_number | 8/8 | ||||
| F52B11.2a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-239 | ||||
| CDS_position | ?-239 | ||||
| Protein_position | ?-80 | ||||
| Intron_number | 1-2/3 | ||||
| Exon_number | 1-3/4 | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
