WormBase Tree Display for Variation: WBVar00600816

WBVar00600816 Name: Public_name: tm5415
    Other_name: T03F1.5.2:c.-11+32_315del
      T03F1.5.1:c.-16+32_315del
    HGVSg: CHROMOSOME_I:g.3839117_3839571del
  Sequence_details: SMap: S_parent: Sequence: T03F1
    Flanking_sequences: gttctccggatacttgatcttgaagcagaa tcacatttcgcaacgaaaccctgaaacata
    Mapping_target: T03F1
    Source_location: 7 CHROMOSOME_I 3839116 3839572 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm5415_external
      tm5415_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5415
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00020187
    Transcript: T03F1.5.3 VEP_consequence: coding_sequence_variant,5_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-332
        CDS_position: ?-315
        Protein_position: ?-105
        Exon_number: 1-2/5
      T03F1.5.2 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T03F1.5.2:c.-11+32_315del
        cDNA_position: ?-376
        CDS_position: ?-315
        Protein_position: ?-105
        Intron_number: 1/5
        Exon_number: 2-3/6
      T03F1.5.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T03F1.5.1:c.-16+32_315del
        cDNA_position: ?-401
        CDS_position: ?-315
        Protein_position: ?-105
        Intron_number: 1/5
        Exon_number: 2-3/6
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype: WBPhenotype:0002421 Paper_evidence: WBPaper00049736
        Curator_confirmed: WBPerson1185
    Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Reference: WBPaper00049736
  Remark (2)
  Method: NBP_knockout_allele