WormBase Tree Display for Variation: WBVar00603334
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| WBVar00603334 | Name | Public_name | WBVar00603334 | |||
|---|---|---|---|---|---|---|
| Other_name | oicr_ce1753 | |||||
| F25C8.3e.1:c.8842A>G | ||||||
| F25C8.3d.1:c.9151A>G | ||||||
| F25C8.3a.1:c.9037A>G | ||||||
| CE47428:p.Ile2948Val | ||||||
| CE41563:p.Ile3013Val | ||||||
| CE43592:p.Ile3051Val | ||||||
| F25C8.3b.1:c.8974A>G | ||||||
| CE47117:p.Ile2992Val | ||||||
| CE47217:p.Ile2983Val | ||||||
| F25C8.3c.1:c.8947A>G | ||||||
| HGVSg | CHROMOSOME_V:g.20897508A>G | |||||
| Sequence_details | SMap | S_parent | Sequence | F25C8 | ||
| Flanking_sequences | GATCAAGAAGCAGCATGGCAAACAGAAATTCTTGAAAAACTTGATGCAAAATCTCATAACATCGTTCCTCCATCA | TTCTTTTGGTCAAATGCTACCAGGAACTTCAACAGCTGAAAGAAGAATTGACAATGAAACCTATTGAGATGACAA | ||||
| Mapping_target | F25C8 | |||||
| Type_of_mutation | Substitution | a | g | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00027649 | From_analysis | WGS_Stein | |||
| Analysis | WGS_Stein | |||||
| DB_info | Database | dbSNP_ss | ss | ss477720455 | ||
| Status | Live | |||||
| Affects | Gene | WBGene00006812 | ||||
| Transcript | F25C8.3d.1 | VEP_consequence | missense_variant | |||
| VEP_impact | MODERATE | |||||
| SIFT | 0.94 | tolerated | ||||
| PolyPhen | 0.029 | benign | ||||
| HGVSc | F25C8.3d.1:c.9151A>G | |||||
| HGVSp | CE43592:p.Ile3051Val | |||||
| cDNA_position | 9151 | |||||
| CDS_position | 9151 | |||||
| Protein_position | 3051 | |||||
| Exon_number | 35/37 | |||||
| Codon_change | Att/Gtt | |||||
| Amino_acid_change | I/V | |||||
| F25C8.3b.1 | VEP_consequence | missense_variant | ||||
| VEP_impact | MODERATE | |||||
| SIFT | 0.96 | tolerated | ||||
| PolyPhen | 0.029 | benign | ||||
| HGVSc | F25C8.3b.1:c.8974A>G | |||||
| HGVSp | CE47117:p.Ile2992Val | |||||
| cDNA_position | 9227 | |||||
| CDS_position | 8974 | |||||
| Protein_position | 2992 | |||||
| Exon_number | 33/36 | |||||
| Codon_change | Att/Gtt | |||||
| Amino_acid_change | I/V | |||||
| F25C8.3e.1 | VEP_consequence | missense_variant | ||||
| VEP_impact | MODERATE | |||||
| SIFT | 0.97 | tolerated | ||||
| PolyPhen | 0.053 | benign | ||||
| HGVSc | F25C8.3e.1:c.8842A>G | |||||
| HGVSp | CE47428:p.Ile2948Val | |||||
| cDNA_position | 8842 | |||||
| CDS_position | 8842 | |||||
| Protein_position | 2948 | |||||
| Exon_number | 31/34 | |||||
| Codon_change | Att/Gtt | |||||
| Amino_acid_change | I/V | |||||
| F25C8.3c.1 | VEP_consequence | missense_variant | ||||
| VEP_impact | MODERATE | |||||
| SIFT | 0.94 | tolerated | ||||
| PolyPhen | 0.029 | benign | ||||
| HGVSc | F25C8.3c.1:c.8947A>G | |||||
| HGVSp | CE47217:p.Ile2983Val | |||||
| cDNA_position | 8947 | |||||
| CDS_position | 8947 | |||||
| Protein_position | 2983 | |||||
| Exon_number | 33/35 | |||||
| Codon_change | Att/Gtt | |||||
| Amino_acid_change | I/V | |||||
| F25C8.3a.1 | VEP_consequence | missense_variant | ||||
| VEP_impact | MODERATE | |||||
| SIFT | 0.95 | tolerated | ||||
| PolyPhen | 0.029 | benign | ||||
| HGVSc | F25C8.3a.1:c.9037A>G | |||||
| HGVSp | CE41563:p.Ile3013Val | |||||
| cDNA_position | 9037 | |||||
| CDS_position | 9037 | |||||
| Protein_position | 3013 | |||||
| Exon_number | 34/37 | |||||
| Codon_change | Att/Gtt | |||||
| Amino_acid_change | I/V | |||||
| Remark | validatation rate is over 97% | |||||
| Method | WGS_Stein |
