WormBase Tree Display for Variation: WBVar00604078

WBVar00604078 Name: Public_name: tm5820
    Other_name: E02H4.3f.2:c.-6_373+18del
      E02H4.3e.1:c.1840_2218+18del
      E02H4.3c.1:c.-6_373+18del
      E02H4.3f.4:c.-6_373+18del
      E02H4.3f.1:c.-6_373+18del
      E02H4.3b.1:c.958_1336+18del
      E02H4.3c.2:c.-6_373+18del
      E02H4.3a.1:c.1840_2218+18del
      E02H4.3d.1:c.958_1336+18del
      E02H4.3f.3:c.-6_373+18del
    HGVSg: CHROMOSOME_X:g.14286722_14287238del
  Sequence_details: SMap: S_parent: Sequence: C11H1
    Flanking_sequences: tggattttgcgacacatttatgaatggtgt cacccagctgaaaaacgacaaaaattatat
    Mapping_target: C11H1
    Source_location: 7 CHROMOSOME_X 14286721 14287239 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm5820_external
      tm5820_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5820
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00006517
    Transcript: E02H4.3f.4 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: E02H4.3f.4:c.-6_373+18del
        cDNA_position: 9-?
        Intron_number: 2-4/8
        Exon_number: 1-4/9
      E02H4.3a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: E02H4.3a.1:c.1840_2218+18del
        cDNA_position: 3471-?
        CDS_position: 1840-?
        Protein_position: 614-?
        Intron_number: 5-7/11
        Exon_number: 5-7/12
      E02H4.3d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: E02H4.3d.1:c.958_1336+18del
        cDNA_position: 960-?
        CDS_position: 958-?
        Protein_position: 320-?
        Intron_number: 7-9/13
        Exon_number: 7-9/14
      E02H4.3f.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: E02H4.3f.1:c.-6_373+18del
        cDNA_position: 1016-?
        Intron_number: 6-8/12
        Exon_number: 5-8/13
      E02H4.3e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: E02H4.3e.1:c.1840_2218+18del
        cDNA_position: 1840-?
        CDS_position: 1840-?
        Protein_position: 614-?
        Intron_number: 4-6/9
        Exon_number: 4-6/10
      E02H4.3f.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: E02H4.3f.2:c.-6_373+18del
        cDNA_position: 392-?
        Intron_number: 5-7/11
        Exon_number: 4-7/12
      E02H4.3b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: E02H4.3b.1:c.958_1336+18del
        cDNA_position: 960-?
        CDS_position: 958-?
        Protein_position: 320-?
        Intron_number: 7-9/13
        Exon_number: 7-9/14
      E02H4.3f.3 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: E02H4.3f.3:c.-6_373+18del
        cDNA_position: 306-?
        Intron_number: 4-6/10
        Exon_number: 3-6/11
      E02H4.3c.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: E02H4.3c.2:c.-6_373+18del
        cDNA_position: 305-?
        Intron_number: 4-6/10
        Exon_number: 3-6/11
      E02H4.3c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: E02H4.3c.1:c.-6_373+18del
        cDNA_position: 750-?
        Intron_number: 5-7/11
        Exon_number: 4-7/12
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: [C11H1] 503/504-[C11H1] 1020/1021 (517 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele