WormBase Tree Display for Variation: WBVar01474208

WBVar01474208 Name: Public_name: tm6316
    Other_name: Y55B1BM.1b.1:c.83-155_207+75delinsAAAGTCAT
      Y55B1BM.1a.1:c.83-155_207+75delinsAAAGTCAT
      Y55B1BM.1c.1:c.83-155_207+75delinsAAAGTCAT
    HGVSg: CHROMOSOME_III:g.418014_418368delinsATGACTTT
  Sequence_details: SMap: S_parent: Sequence: Y55B1BM
    Flanking_sequences: cagcaacaagaaaaacattaagaagaattt gcttatgacttttaaattgccgaatttcac
    Mapping_target: Y55B1BM
    Source_location: 7 CHROMOSOME_III 418013 418369 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: ATGACTTT
      Deletion
    PCR_product: tm6316_external
      tm6316_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 6316
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00305828
      WBGene00021910
    Transcript: Y55B1BM.1a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y55B1BM.1a.1:c.83-155_207+75delinsAAAGTCAT
        Intron_number: 2-3/13
        Exon_number: 3/14
      Y55B1BM.2
      Y55B1BM.1c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y55B1BM.1c.1:c.83-155_207+75delinsAAAGTCAT
        Intron_number: 2-3/9
        Exon_number: 3/10
      Y55B1BM.1b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y55B1BM.1b.1:c.83-155_207+75delinsAAAGTCAT
        Intron_number: 2-3/12
        Exon_number: 3/13
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Description: Phenotype: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
      WBPhenotype:0000688 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as lethal OR sterile by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 9909/9910-ATGACTTT-10264/10265 (355 bp deletion + 8 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele