WormBase Tree Display for Variation: WBVar01609402

WBVar01609402 Name: Public_name: WBVar01609402
    Other_name: cewivar00288576
      Y54G2A.5b.1:c.64C>G
      CE48813:p.Pro4Ala
      Y54G2A.5c.1:c.10C>G
      CE33889:p.Pro22Ala
      CE48099:p.Pro38Ala
      Y54G2A.17a.1:c.-39+2973G>C
      Y54G2A.5a.1:c.112C>G
    HGVSg: CHROMOSOME_IV:g.2887427C>G
  Sequence_details: SMap: S_parent: Sequence: Y54G2A
    Flanking_sequences: CAATTAGCCGGGCTCAACGAGATGCCGGCG CAGCAGTAGCAGCTCAAAGCATCGGAGGTC
    Mapping_target: Y54G2A
    Source_location: 225 CHROMOSOME_IV 2887425 2887425 From_analysis: Million_mutation_project_reanalysis
    Type_of_mutation: Substitution: C G
    SeqStatus: Sequenced
  Variation_type: Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00006622 From_analysis: Million_mutation_project_reanalysis
      WBStrain00022887 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023139 From_analysis: Million_mutation_project_reanalysis
      WBStrain00027648 From_analysis: Million_mutation_project_reanalysis
    Laboratory: VC
    Analysis: Million_mutation_project_reanalysis
    Status: Live
  Affects: Gene: WBGene00021871
      WBGene00021882
    Transcript: Y54G2A.5b.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        SIFT: 1 tolerated_low_confidence
        PolyPhen: 0.009 benign
        HGVSc: Y54G2A.5b.1:c.64C>G
        HGVSp: CE33889:p.Pro22Ala
        cDNA_position: 161
        CDS_position: 64
        Protein_position: 22
        Exon_number: 3/6
        Codon_change: Cca/Gca
        Amino_acid_change: P/A
      Y54G2A.5c.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        SIFT: 1 tolerated_low_confidence
        PolyPhen: 0.001 benign
        HGVSc: Y54G2A.5c.1:c.10C>G
        HGVSp: CE48813:p.Pro4Ala
        cDNA_position: 10
        CDS_position: 10
        Protein_position: 4
        Exon_number: 1/3
        Codon_change: Cca/Gca
        Amino_acid_change: P/A
      Y54G2A.17a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y54G2A.17a.1:c.-39+2973G>C
        Intron_number: 1/8
      Y54G2A.5a.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        SIFT: 1 tolerated_low_confidence
        PolyPhen: 0.784 possibly_damaging
        HGVSc: Y54G2A.5a.1:c.112C>G
        HGVSp: CE48099:p.Pro38Ala
        cDNA_position: 128
        CDS_position: 112
        Protein_position: 38
        Exon_number: 3/6
        Codon_change: Cca/Gca
        Amino_acid_change: P/A
  Method: WGS_Flibotte