WormBase Tree Display for Variation: WBVar01726532
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| WBVar01726532 | Name | Public_name | WBVar01726532 | |||||
|---|---|---|---|---|---|---|---|---|
| Other_name | cewivar00424904 | |||||||
| Y54G2A.2a.1:c.1587C>T | ||||||||
| CE48618:p.Phe74= | ||||||||
| Y54G2A.2d.1:c.222C>T | ||||||||
| CE48868:p.Phe250= | ||||||||
| Y54G2A.2c.1:c.750C>T | ||||||||
| Y54G2A.2b.1:c.*31C>T | ||||||||
| CE26776:p.Phe529= | ||||||||
| HGVSg | CHROMOSOME_IV:g.2796465C>T | |||||||
| Sequence_details | SMap | S_parent | Sequence | Y54G2A | ||||
| Flanking_sequences | CGACGCTGTGACATATGTTTGGACCAATTT | ATCTCGCCAAATGCTAATCACTTGGGACCA | ||||||
| Mapping_target | Y54G2A | |||||||
| Source_location | 225 | CHROMOSOME_IV | 2796463 | 2796463 | From_analysis | Million_mutation_project_reanalysis | ||
| Type_of_mutation | Substitution | C | T | |||||
| SeqStatus | Sequenced | |||||||
| Variation_type | Natural_variant | |||||||
| Origin | Species | Caenorhabditis elegans | ||||||
| Strain | WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | ||||||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | ||||||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | ||||||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | ||||||
| Laboratory | VC | |||||||
| Analysis | Million_mutation_project_reanalysis | |||||||
| Status | Live | |||||||
| Affects | Gene | WBGene00021868 | ||||||
| Transcript | Y54G2A.2c.1 | VEP_consequence | synonymous_variant | |||||
| VEP_impact | LOW | |||||||
| HGVSc | Y54G2A.2c.1:c.750C>T | |||||||
| HGVSp | CE48868:p.Phe250= | |||||||
| cDNA_position | 750 | |||||||
| CDS_position | 750 | |||||||
| Protein_position | 250 | |||||||
| Exon_number | 5/5 | |||||||
| Codon_change | ttC/ttT | |||||||
| Amino_acid_change | F | |||||||
| Y54G2A.2a.1 | VEP_consequence | synonymous_variant | ||||||
| VEP_impact | LOW | |||||||
| HGVSc | Y54G2A.2a.1:c.1587C>T | |||||||
| HGVSp | CE26776:p.Phe529= | |||||||
| cDNA_position | 1596 | |||||||
| CDS_position | 1587 | |||||||
| Protein_position | 529 | |||||||
| Exon_number | 11/12 | |||||||
| Codon_change | ttC/ttT | |||||||
| Amino_acid_change | F | |||||||
| Y54G2A.2d.1 | VEP_consequence | synonymous_variant | ||||||
| VEP_impact | LOW | |||||||
| HGVSc | Y54G2A.2d.1:c.222C>T | |||||||
| HGVSp | CE48618:p.Phe74= | |||||||
| cDNA_position | 222 | |||||||
| CDS_position | 222 | |||||||
| Protein_position | 74 | |||||||
| Exon_number | 2/2 | |||||||
| Codon_change | ttC/ttT | |||||||
| Amino_acid_change | F | |||||||
| Y54G2A.2b.1 | VEP_consequence | 3_prime_UTR_variant | ||||||
| VEP_impact | MODIFIER | |||||||
| HGVSc | Y54G2A.2b.1:c.*31C>T | |||||||
| cDNA_position | 1651 | |||||||
| Exon_number | 12/12 | |||||||
| Method | WGS_Flibotte |
