WormBase Tree Display for Variation: WBVar01726535
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WBVar01726535 | Name | Public_name | WBVar01726535 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00424907 | |||||||
CE48618:p.Ala107= | ||||||||
Y54G2A.2c.1:c.849C>T | ||||||||
Y54G2A.2b.1:c.*130C>T | ||||||||
CE26776:p.Ala562= | ||||||||
Y54G2A.2a.1:c.1686C>T | ||||||||
Y54G2A.2d.1:c.321C>T | ||||||||
CE48868:p.Ala283= | ||||||||
HGVSg | CHROMOSOME_IV:g.2796564C>T | |||||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | ||||
Flanking_sequences | AGGAAATCGAACTGCAAATGCGACGGCGGC | CCCGGAGCCGCTGATGGACTCAGAAAACGG | ||||||
Mapping_target | Y54G2A | |||||||
Source_location | 225 | CHROMOSOME_IV | 2796562 | 2796562 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Substitution | C | T | |||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||||
WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | ||||||
WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | ||||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00021868 | ||||||
Transcript | Y54G2A.2c.1 | VEP_consequence | synonymous_variant | |||||
VEP_impact | LOW | |||||||
HGVSc | Y54G2A.2c.1:c.849C>T | |||||||
HGVSp | CE48868:p.Ala283= | |||||||
cDNA_position | 849 | |||||||
CDS_position | 849 | |||||||
Protein_position | 283 | |||||||
Exon_number | 5/5 | |||||||
Codon_change | gcC/gcT | |||||||
Amino_acid_change | A | |||||||
Y54G2A.2a.1 | VEP_consequence | synonymous_variant | ||||||
VEP_impact | LOW | |||||||
HGVSc | Y54G2A.2a.1:c.1686C>T | |||||||
HGVSp | CE26776:p.Ala562= | |||||||
cDNA_position | 1695 | |||||||
CDS_position | 1686 | |||||||
Protein_position | 562 | |||||||
Exon_number | 11/12 | |||||||
Codon_change | gcC/gcT | |||||||
Amino_acid_change | A | |||||||
Y54G2A.2d.1 | VEP_consequence | synonymous_variant | ||||||
VEP_impact | LOW | |||||||
HGVSc | Y54G2A.2d.1:c.321C>T | |||||||
HGVSp | CE48618:p.Ala107= | |||||||
cDNA_position | 321 | |||||||
CDS_position | 321 | |||||||
Protein_position | 107 | |||||||
Exon_number | 2/2 | |||||||
Codon_change | gcC/gcT | |||||||
Amino_acid_change | A | |||||||
Y54G2A.2b.1 | VEP_consequence | 3_prime_UTR_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.2b.1:c.*130C>T | |||||||
cDNA_position | 1750 | |||||||
Exon_number | 12/12 | |||||||
Method | WGS_Flibotte |