WormBase Tree Display for Variation: WBVar02047092
expand all nodes | collapse all nodes | view schema
WBVar02047092 | Name | Public_name | WBVar02047092 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00776245 | |||||||
CE48813:p.Ala3dup | ||||||||
CE48099:p.Ala37dup | ||||||||
Y54G2A.17a.1:c.-39+2976_-39+2978dup | ||||||||
Y54G2A.5c.1:c.4_5insCGG | ||||||||
CE33889:p.Ala21dup | ||||||||
Y54G2A.5a.1:c.106_107insCGG | ||||||||
Y54G2A.5b.1:c.58_59insCGG | ||||||||
HGVSg | CHROMOSOME_IV:g.2887421_2887422insCGG | |||||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | ||||
Flanking_sequences | CGGAGCAATTAGCCGGGCTCAACGAGATGC | CGGCGCCAGCAGTAGCAGCTCAAAGCATCG | ||||||
Mapping_target | Y54G2A | |||||||
Source_location | 225 | CHROMOSOME_IV | 2887419 | 2887420 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Insertion | CGG | ||||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00022868 | From_analysis | Million_mutation_project_reanalysis | |||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00021871 | ||||||
WBGene00021882 | ||||||||
Transcript | Y54G2A.5b.1 | VEP_consequence | inframe_insertion | |||||
VEP_impact | MODERATE | |||||||
HGVSc | Y54G2A.5b.1:c.58_59insCGG | |||||||
HGVSp | CE33889:p.Ala21dup | |||||||
cDNA_position | 155-156 | |||||||
CDS_position | 58-59 | |||||||
Protein_position | 20 | |||||||
Exon_number | 3/6 | |||||||
Codon_change | ccg/cCGGcg | |||||||
Amino_acid_change | P/PA | |||||||
Y54G2A.5c.1 | VEP_consequence | inframe_insertion | ||||||
VEP_impact | MODERATE | |||||||
HGVSc | Y54G2A.5c.1:c.4_5insCGG | |||||||
HGVSp | CE48813:p.Ala3dup | |||||||
cDNA_position | 4-5 | |||||||
CDS_position | 4-5 | |||||||
Protein_position | 2 | |||||||
Exon_number | 1/3 | |||||||
Codon_change | ccg/cCGGcg | |||||||
Amino_acid_change | P/PA | |||||||
Y54G2A.17a.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.17a.1:c.-39+2976_-39+2978dup | |||||||
Intron_number | 1/8 | |||||||
Y54G2A.5a.1 | VEP_consequence | inframe_insertion | ||||||
VEP_impact | MODERATE | |||||||
HGVSc | Y54G2A.5a.1:c.106_107insCGG | |||||||
HGVSp | CE48099:p.Ala37dup | |||||||
cDNA_position | 122-123 | |||||||
CDS_position | 106-107 | |||||||
Protein_position | 36 | |||||||
Exon_number | 3/6 | |||||||
Codon_change | ccg/cCGGcg | |||||||
Amino_acid_change | P/PA | |||||||
Method | WGS_Flibotte |