WormBase Tree Display for Variation: WBVar02082259
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WBVar02082259 | Name | Public_name | WBVar02082259 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | cewivar00811892 | |||||||
Y54G2A.5b.1:c.153_165delinsGGCGATG | ||||||||
Y54G2A.5c.1:c.99_111delinsGGCGATG | ||||||||
Y54G2A.17a.1:c.-39+2872_-39+2884delinsCATCGCC | ||||||||
CE48099:p.Ser68_Asp71delinsAlaMet | ||||||||
CE33889:p.Ser52_Asp55delinsAlaMet | ||||||||
CE48813:p.Ser34_Asp37delinsAlaMet | ||||||||
Y54G2A.5a.1:c.201_213delinsGGCGATG | ||||||||
HGVSg | CHROMOSOME_IV:g.2887516_2887528delinsGGCGATG | |||||||
Sequence_details | SMap | S_parent | Sequence | Y54G2A | ||||
Flanking_sequences | CATGAGGCAGATGGGAATGTTGGATGGCTC | GATGGTGTGGAGAAGCCGAAGGTGATTGAT | ||||||
Mapping_target | Y54G2A | |||||||
Source_location | 225 | CHROMOSOME_IV | 2887514 | 2887526 | From_analysis | Million_mutation_project_reanalysis | ||
Type_of_mutation | Insertion | GGCGATG | ||||||
Deletion | ||||||||
SeqStatus | Sequenced | |||||||
Variation_type | Natural_variant | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain (11) | ||||||||
Laboratory | VC | |||||||
Analysis | Million_mutation_project_reanalysis | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00021871 | ||||||
WBGene00021882 | ||||||||
Transcript | Y54G2A.5b.1 | VEP_consequence | protein_altering_variant | |||||
VEP_impact | MODERATE | |||||||
HGVSc | Y54G2A.5b.1:c.153_165delinsGGCGATG | |||||||
HGVSp | CE33889:p.Ser52_Asp55delinsAlaMet | |||||||
cDNA_position | 250-262 | |||||||
CDS_position | 153-165 | |||||||
Protein_position | 51-55 | |||||||
Exon_number | 3/6 | |||||||
Codon_change | tcCTCGGCGATGGAT/tcGGCGATG | |||||||
Amino_acid_change | SSAMD/SAM | |||||||
Y54G2A.5c.1 | VEP_consequence | protein_altering_variant | ||||||
VEP_impact | MODERATE | |||||||
HGVSc | Y54G2A.5c.1:c.99_111delinsGGCGATG | |||||||
HGVSp | CE48813:p.Ser34_Asp37delinsAlaMet | |||||||
cDNA_position | 99-111 | |||||||
CDS_position | 99-111 | |||||||
Protein_position | 33-37 | |||||||
Exon_number | 1/3 | |||||||
Codon_change | tcCTCGGCGATGGAT/tcGGCGATG | |||||||
Amino_acid_change | SSAMD/SAM | |||||||
Y54G2A.17a.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y54G2A.17a.1:c.-39+2872_-39+2884delinsCATCGCC | |||||||
Intron_number | 1/8 | |||||||
Y54G2A.5a.1 | VEP_consequence | protein_altering_variant | ||||||
VEP_impact | MODERATE | |||||||
HGVSc | Y54G2A.5a.1:c.201_213delinsGGCGATG | |||||||
HGVSp | CE48099:p.Ser68_Asp71delinsAlaMet | |||||||
cDNA_position | 217-229 | |||||||
CDS_position | 201-213 | |||||||
Protein_position | 67-71 | |||||||
Exon_number | 3/6 | |||||||
Codon_change | tcCTCGGCGATGGAT/tcGGCGATG | |||||||
Amino_acid_change | SSAMD/SAM | |||||||
Method | WGS_Flibotte |