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WormBase Tree Display for Variation: WBVar02082259

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Name Class

WBVar02082259NamePublic_nameWBVar02082259
Other_namecewivar00811892
Y54G2A.5b.1:c.153_165delinsGGCGATG
Y54G2A.5c.1:c.99_111delinsGGCGATG
Y54G2A.17a.1:c.-39+2872_-39+2884delinsCATCGCC
CE48099:p.Ser68_Asp71delinsAlaMet
CE33889:p.Ser52_Asp55delinsAlaMet
CE48813:p.Ser34_Asp37delinsAlaMet
Y54G2A.5a.1:c.201_213delinsGGCGATG
HGVSgCHROMOSOME_IV:g.2887516_2887528delinsGGCGATG
Sequence_detailsSMapS_parentSequenceY54G2A
Flanking_sequencesCATGAGGCAGATGGGAATGTTGGATGGCTCGATGGTGTGGAGAAGCCGAAGGTGATTGAT
Mapping_targetY54G2A
Source_location225CHROMOSOME_IV28875142887526From_analysisMillion_mutation_project_reanalysis
Type_of_mutationInsertionGGCGATG
Deletion
SeqStatusSequenced
Variation_typeNatural_variant
OriginSpeciesCaenorhabditis elegans
Strain (11)
LaboratoryVC
AnalysisMillion_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00021871
WBGene00021882
TranscriptY54G2A.5b.1VEP_consequenceprotein_altering_variant
VEP_impactMODERATE
HGVScY54G2A.5b.1:c.153_165delinsGGCGATG
HGVSpCE33889:p.Ser52_Asp55delinsAlaMet
cDNA_position250-262
CDS_position153-165
Protein_position51-55
Exon_number3/6
Codon_changetcCTCGGCGATGGAT/tcGGCGATG
Amino_acid_changeSSAMD/SAM
Y54G2A.5c.1VEP_consequenceprotein_altering_variant
VEP_impactMODERATE
HGVScY54G2A.5c.1:c.99_111delinsGGCGATG
HGVSpCE48813:p.Ser34_Asp37delinsAlaMet
cDNA_position99-111
CDS_position99-111
Protein_position33-37
Exon_number1/3
Codon_changetcCTCGGCGATGGAT/tcGGCGATG
Amino_acid_changeSSAMD/SAM
Y54G2A.17a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G2A.17a.1:c.-39+2872_-39+2884delinsCATCGCC
Intron_number1/8
Y54G2A.5a.1VEP_consequenceprotein_altering_variant
VEP_impactMODERATE
HGVScY54G2A.5a.1:c.201_213delinsGGCGATG
HGVSpCE48099:p.Ser68_Asp71delinsAlaMet
cDNA_position217-229
CDS_position201-213
Protein_position67-71
Exon_number3/6
Codon_changetcCTCGGCGATGGAT/tcGGCGATG
Amino_acid_changeSSAMD/SAM
MethodWGS_Flibotte