WormBase Tree Display for Variation: WBVar02123242

WBVar02123242 Name: Public_name: WBVar02123242
    Other_name: cewivar00854165
    HGVSg: CHROMOSOME_IV:g.2796003_2806002del
  Sequence_details: SMap: S_parent: Sequence: Y54G2A
    Flanking_sequences: AAATTTCGGGAAATCTAATTTTTAAAAGTT TTTTCAGCTACTGTGCAGACTCAAAGCTTT
    Mapping_target: Y54G2A
    Source_location: 225 CHROMOSOME_IV 2796001 2806000 From_analysis: Million_mutation_project_reanalysis
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00022850 From_analysis: Million_mutation_project_reanalysis
      WBStrain00027662 From_analysis: Million_mutation_project_reanalysis
    Laboratory: VC
    Analysis: Million_mutation_project_reanalysis
    Status: Live
  Affects: Gene: WBGene00021868
      WBGene00201830
      WBGene00044488
      WBGene00021894
      WBGene00023179
      WBGene00045397
      WBGene00021875
      WBGene00044487
      WBGene00199591
      WBGene00023178
      WBGene00023180
      WBGene00023182
    Transcript: Y54G2A.10b.2 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2/3
        Exon_number: 1-4/4
      Y54G2A.32.2 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 1-6/7
        Exon_number: 1-8/8
      Y54G2A.2d.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1/1
        Exon_number: 2/2
      Y54G2A.65 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      Y54G2A.t1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      Y54G2A.10a.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-4/5
        Exon_number: 1-6/6
      Y54G2A.t5 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      Y54G2A.10b.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 1-3/4
        Exon_number: 1-5/5
      Y54G2A.32.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 1-4/5
        Exon_number: 1-6/6
      Y54G2A.2b.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 10/11
        Exon_number: 11-12/12
      Y54G2A.2c.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 4/4
        Exon_number: 5/5
      Y54G2A.t2 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      Y54G2A.44.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-6/7
        Exon_number: 1-8/8
      Y54G2A.2a.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 10/11
        Exon_number: 11-12/12
      Y54G2A.52.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-4/5
        Exon_number: 1-6/6
      Y54G2A.t3 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      Y54G2A.70 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      Y54G2A.45a.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2/9
        Exon_number: 1-2/10
  Remark: The boundaries of this variant have been identified only approximately
    This allele is a copy number variation determined from whole-genome sequence data, and should be assumed to be non-homozygous
  Method: WGS_Flibotte