WormBase Tree Display for Variation: WBVar02133498
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| WBVar02133498 | Evidence | Paper_evidence | WBPaper00045317 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | h4020 | ||||
| Other_name | Y54G2A.2d.1:c.187-10C>T | |||||
| Y54G2A.2b.1:c.1594C>T | ||||||
| Y54G2A.2a.1:c.1552-10C>T | ||||||
| Y54G2A.2c.1:c.715-10C>T | ||||||
| CE37292:p.Arg532Cys | ||||||
| HGVSg | CHROMOSOME_IV:g.2796420C>T | |||||
| Sequence_details | SMap | S_parent | Sequence | Y54G2A | ||
| Flanking_sequences | TTTCCGAATTTCTCCCAAAAAAACTACAGTAACCCTCTCC | GTTTTAAAGGTTGACGACGCTGTGACATATGTTTGGACCA | ||||
| Mapping_target | CHROMOSOME_IV | |||||
| Source_location | 200 | CHROMOSOME_IV | 2796417 | 2796417 | ||
| Type_of_mutation | Substitution | C | T | |||
| SeqStatus | Sequenced | |||||
| Variation_type | Allele | |||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00023775 | |||||
| Laboratory | KR | |||||
| Analysis | WGS_Rose | |||||
| Status | Live | |||||
| Affects | Gene | WBGene00021868 | ||||
| Transcript | Y54G2A.2c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y54G2A.2c.1:c.715-10C>T | |||||
| Intron_number | 4/4 | |||||
| Y54G2A.2a.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y54G2A.2a.1:c.1552-10C>T | |||||
| Intron_number | 10/11 | |||||
| Y54G2A.2d.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | Y54G2A.2d.1:c.187-10C>T | |||||
| Intron_number | 1/1 | |||||
| Y54G2A.2b.1 (12) | ||||||
| Reference | WBPaper00040589 | |||||
| WBPaper00000975 | ||||||
| WBPaper00003985 | ||||||
| WBPaper00000699 | ||||||
| WBPaper00045317 | ||||||
| Method | WGS_Rose |
