WormBase Tree Display for Sequence: F48B9

F48B9 DNA: F48B9 40015
  SMap: S_child: Gene_child: WBGene00018590 16616 17301
        WBGene00018587 34120 39086
        WBGene00018592 22697 21900
        WBGene00018589 18283 27272
        WBGene00197780 5681 5880
        WBGene00195725 6975 6820
        WBGene00018591 3338 511
        WBGene00201092 8891 9030
        WBGene00202146 6820 6962
        WBGene00018593 29643 27122
      CDS_child: F48B9.1 34130 39086
        F48B9.1:wp228 34130 39086
        F48B9.2:wp228 26089 27069
        F48B9.3 18341 27069
        F48B9.3:wp228 18341 19171
        F48B9.4 16616 16999
        F48B9.5 2484 846
        F48B9.5:wp108 2484 846
        F48B9.6:wp73 22166 21900
        F48B9.7 22697 21900
        F48B9.8 29621 27261
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g9n11_x5_X_p 16616 16996
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g22n11_x5_X_m 29639 27291
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g52_x5_X_p 34625 35683
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g83_x5_X_p 35810 36521
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g109_x5_X_p 36686 39032
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g31n11_x5_X_m 29639 27264
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g128_x5_X_m 2236 2139
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g2n11_x5_X_p 16616 16996
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g57_x5_X_p 34469 36602
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g23n11_x5_X_m 2484 849
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g87_x5_X_p 36686 39017
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g29n11_x5_X_m 29639 27264
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g2n11_x5_X_p 16616 16996
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g2n11_x5_X_p 16616 16996
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g81_x5_X_p 34730 34804
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g115_x5_X_m 28610 28474
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g43_x5_X_m 28308 28032
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g112_x5_X_p 37791 39071
        RNASEQ_embryo_him-8_20dC_post-L1_g104_x5_X_m 1183 1109
        RNASEQ_embryo_him-8_20dC_post-L1_g74_x5_X_p 16616 16942
        RNASEQ_embryo_him-8_20dC_post-L1_g111_x5_X_p 36377 36427
        RNASEQ_embryo_him-8_20dC_post-L1_g82n11_x5_X_m 2480 2421
        RNASEQ_embryo_him-8_20dC_post-L1_g27n11_x5_X_m 29639 27264
        RNASEQ_embryo_him-8_20dC_post-L1_g120_x5_X_m 2322 2236
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g21n11_x5_X_m 29639 27264
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g125_x5_X_m 2331 2257
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g4n11_x5_X_p 16616 16996
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g157_x5_X_p 36686 37712
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g93_x5_X_p 34469 35827
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g146_x5_X_m 984 852
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g128_x5_X_p 36501 36602
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g116_x5_X_m 1390 1257
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g88_x5_X_p 18443 18935
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g71_x5_X_p 26089 26979
        RNASEQ_L4_soma_JK1107_no_DNaseI_g114_x5_X_p 18762 18926
        RNASEQ_L4_soma_JK1107_no_DNaseI_g7n11_x5_X_p 16616 16996
        RNASEQ_L4_soma_JK1107_no_DNaseI_g115_x5_X_p 26089 26283
        RNASEQ_L4_soma_JK1107_no_DNaseI_g36n11_x5_X_m 1038 950
        RNASEQ_L4_soma_JK1107_no_DNaseI_g135_x5_X_p 18428 18481
        RNASEQ_L4_soma_JK1107_no_DNaseI_g25n11_x5_X_m 1390 1355
        RNASEQ_L4_soma_JK1107_no_DNaseI_g159_x5_X_p 34757 34804
        RNASEQ_L4_soma_JK1107_no_DNaseI_g174_x5_X_p 37804 39039
        RNASEQ_L4_soma_JK1107_no_DNaseI_g11n11_x5_X_m 29639 27264
        RNASEQ_L4_soma_JK1107_no_DNaseI_g20n11_x5_X_m 2484 849
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g2n11_x5_X_p 16616 16996
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g104_x5_X_m 1301 1130
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g30n11_x5_X_m 29639 27264
        RNASEQ_early_embryo_g34n11_x5_X_m 29639 27264
        RNASEQ_early_embryo_g72_x5_X_m 2182 849
        RNASEQ_early_embryo_g54n11_x5_X_p 16616 16996
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g31n11_x5_X_p 16616 16996
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g71_x5_X_p 34130 39068
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g79_x5_X_m 2182 849
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g41n11_x5t1_X_m 29639 27264
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g5n11_x5_X_p 16616 16996
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g122_x5_X_m 2301 2236
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g15n11_x5t1_X_m 29639 27264
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g59_x5_X_m 2430 849
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g7n11_x5_X_p 16616 16996
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g46_x5_X_m 29555 27264
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g101_x5_X_m 1304 1163
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g55_x5_X_p 35810 36518
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g13n11_x5_X_m 29639 27264
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g91_x5_X_p 18640 18764
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g144_x5_X_p 26203 26289
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g11n11_x5_X_p 16616 16996
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g107_x5_X_m 2484 2236
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g126_x5_X_m 2182 1436
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g85_x5_X_p 34742 34804
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g124_x5_X_m 1150 1051
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g113_x5_X_p 18768 18926
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g80_x5_X_p 36686 39071
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g43_x5_X_p 26089 26727
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g110_x5_X_m 1283 1130
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g77_x5_X_p 18449 18627
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g24_x5_X_m 29555 27264
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g67_x5_X_m 1038 849
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g70_x5_X_p 36501 36754
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g61_x5_X_p 18637 18869
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g85_x5_X_p 37782 39023
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g65_x5_X_p 16699 17040
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g41_x5_X_m 2430 1376
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g15n11_x5_X_m 29639 27264
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g3n11_x5_X_p 16616 16996
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g114_x5_X_m 2330 2268
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g3n11_x5_X_p 16616 16996
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g128_x5_X_m 2330 2268
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g139_x5_X_p 26089 26187
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g144_x5_X_p 36402 36510
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g25n11_x5_X_m 29639 27381
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g113_x5_X_p 34667 35707
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g146_x5_X_p 18592 18860
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g16n11_x5_X_m 29639 27315
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g70_x5_X_p 36347 37709
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g6n11_x5_X_p 16616 16996
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g132_x5_X_m 2243 2131
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g130_x5_X_m 2331 2251
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g164_x5_X_p 37782 39035
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g122_x5_X_p 34532 35644
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g135_x5_X_p 26089 26223
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g12n11_x5_X_m 29639 27264
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g114_x5_X_p 18682 18869
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g157_x5_X_p 36731 37721
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g5n11_x5_X_p 16616 16996
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g128_x5_X_p 36501 36709
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g49_x5_X_p 26089 26916
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g103_x5_X_m 975 876
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g13n11_x5_X_m 29639 27264
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g119_x5_X_p 18547 18764
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g23n11_x5_X_p 16616 16844
        F48B9.gc1 2484 846
        F48B9.gc2 16616 16999
        F48B9.gc3 18341 27069
        F48B9.gc4 29639 27261
        F48B9.gc5 34130 39072
        ContigX.elegans.jigsaw.350.mRNA350 16586 17435
        ContigX.elegans.jigsaw.353.mRNA353 29836 27122
        ContigX.elegans.jigsaw.352.mRNA352 26027 27118
        ContigX.elegans.jigsaw.351.mRNA351 18335 19171
        ContigX.elegans.jigsaw.349.mRNA349 2555 510
        AG1201_F48B9.5.T1 2484 846
        AG1201_F48B9.4.T2 16616 16888
        AG1201_F48B9.4.T4 16616 16999
        AG1201_F48B9.4.T5 16616 16999
        AG1201_F48B9.4.T3 16616 17043
        AG1201_F48B9.4.T1 16904 16999
        AG1201_F48B9.3.T1 18341 27069
        AG1201_F48B9.3.T2 18341 27069
        AG1201_F48B9.8.T1 29639 27261
        AG1201_RIT6P.81.T1 32574 32726
        AG1201_RIT6P.81.T2 32586 32726
        AG1201_T24C12.2.T5 34130 34926
        AG1201_RIT6M.1270.T1 37576 37440
      Transcript: F48B9.9 6975 6820
        F48B9.10 5681 5880
        F48B9.11 8891 9030
        F48B9.12 6820 6962
        F48B9.t1:wp112 28821 28961
        F48B9.1.1 34120 39086
        F48B9.3.1 18283 27272
        F48B9.4.1 16616 17301
        F48B9.5.1 3338 511
        F48B9.8.1 29643 27122
      Transposon: WBTransposon00000319 23807 25142
        WBTransposon00000676 22697 21900
      PCR_product (27)
      Allele (586)
      Oligo_set: Aff_F48B9.1 36313 39085
        Aff_F48B9.2 26469 27068
        Aff_F48B9.3 18341 19170
        Aff_F48B9.4 16496 16999
        Aff_F48B9.5 2436 946
        Aff_F48B9.6 22165 21899
        Aff_F48B9.7 22696 22427
        Aff_F48B9.8 28630 27260
      Feature_object (167)
      Feature_data: F48B9:Polysome 1 40015
        F48B9:TranscriptionallyActiveRegion 1 40015
        F48B9:ChIPSeqTF 1 40015
        F48B9:TRF 1 40015
        F48B9:Dust 1 40015
        F48B9:inverted 1 40015
      Homol_data (16)
  Structure: From: Source: CHROMOSOME_X
    Overlap_right: T24C12 39816
    Overlap_left: EGAP7
    Clone_left_end: F48B9 1
      T24C12 26877
    Clone_right_end: F48B9 40015
  DB_info: Database: EMBL NDB_AC FO081051
        NDB_ID _U40955
        NDB_SV FO081051.2
    Secondary_accession: U40955
    DB_remark: The 5' clone is EGAP7, 200 bp overlap; the 3' clone is T24C12, 200 bp overlap. Actual start of this clone is at base position 1 of F48B9; actual end is at 40014 of F48B9.
      [121025] Sequence correction WBsf268278 : Insertion G1 bases from @ 19115
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Miller N
      Wilson RK
    From_laboratory: RW
    Date: 17 Aug 1995 00:00:00
      10 Nov 1995 00:00:00
    Date_directory: 950816
    Species: Caenorhabditis elegans
  Visible: Clone: F48B9
    Reference: WBPaper00015325
  Properties: Genomic_canonical
    Checksum: MD5: 368b42134566a680196ed49ea3ae55ce
    Status: Shotgun
      Finished
      Submitted: 17 Aug 1995 00:00:00
  Map: Sequence-X
  Interpolated_map_position: X -16.9307
  Method: Genomic_canonical