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WormBase Tree Display for CDS: OVOC8110

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Name Class

OVOC8110EvidenceCurator_confirmedWBPerson2062
SMapS_parentSequenceOVOC_OM3_71
StructureSource_exons133
718801
10721171
15651639
19852190
28613049
34663576
78267927
DB_infoDB_remarkOVO-UNC-64 protein; contains similarity to Pfam domains PF00804 (Syntaxin), PF05739 (SNARE domain); contains similarity to Interpro domains IPR000727 (Target SNARE coiled-coil homology domain), IPR010989 (SNARE), IPR006011 (Syntaxin, N-terminal domain)
OriginFrom_laboratoryMBM
SpeciesOnchocerca volvulus
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00244919
Corresponding_transcriptOVOC8110.1
Corresponding_proteinOVP14298
Matching_cDNAovolvulus_GG317|c111_g2_i1Inferred_automaticallytranscript_builder.pl
Brief_identificationSyntaxin-1A homologPerson_evidenceWBPerson2973
RNASeq_FPKMWBls:0000104 (15)
WBls:000010716.6435From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395
WBls:000010815.2144From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393
16.8185From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391
25.2222From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392
WBls:000066410.5633From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396
8.3361From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397
Remark[140429 es9] Splice sites of OVOC8110 gene model corrected using RNA-Seq, protein evidence and SL1 data.Curator_confirmedWBPerson2062
Methodcurated