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WormBase Tree Display for CDS: PPA28209

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Name Class

PPA28209SMapS_parentSequencePPA_ChrII
StructureSource_exons (41)
DB_infoDatabasepristionchus.orgcdsgene-UMA-S10-76.28
DB_remarkPPA-UNC-54 protein; contains similarity to Pfam domains PF00063 (Myosin head (motor domain)), PF01576 (Myosin tail), PF02736 (Myosin N-terminal SH3-like domain); contains similarity to Interpro domains IPR004009 (Myosin, N-terminal, SH3-like), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR002928 (Myosin tail), IPR027401 (), IPR008989 (Myosin S1 fragment, N-terminal), IPR036961 (Kinesin motor domain superfamily), IPR001609 (Myosin head, motor domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00117763
Corresponding_transcriptPPA28209.1
Corresponding_proteinPP65746
Corresponding_oligo_setGPL14372_Probes_12539
GPL14372_Probes_58914
GPL14372_Probes_58916
Matching_cDNAFE939379Inferred_automaticallytranscript_builder.pl
FE931691Inferred_automaticallytranscript_builder.pl
AW097572Inferred_automaticallytranscript_builder.pl
AW097001Inferred_automaticallytranscript_builder.pl
AW052325Inferred_automaticallytranscript_builder.pl
FE931993Inferred_automaticallytranscript_builder.pl
AI986550Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_12539
GPL14372_Probes_58914
GPL14372_Probes_58916
RNASeq_FPKMWBls:00000324.86452From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001017.65936From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMA-S10-76.28Curator_confirmedWBPerson4055
Methodcurated