WormBase Tree Display for Gene: WBGene00001072
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| WBGene00001072 | SMap | S_parent | Sequence | T14B4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | dpy-10 | Person_evidence | WBPerson261 | |||||
| Sequence_name | T14B4.7 | ||||||||
| Molecular_name | T14B4.7 | ||||||||
| T14B4.7.1 | |||||||||
| CE51880 | |||||||||
| Other_name | rol-7 | ||||||||
| CELE_T14B4.7 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | dpy-10 | ||||||||
| DB_info | Database | AceView | gene | 2H0 | |||||
| WormQTL | gene | WBGene00001072 | |||||||
| WormFlux | gene | WBGene00001072 | |||||||
| NDB | locus_tag | CELE_T14B4.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001072|UniProtKB=P35800 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 36805042 | |||||||
| RefSeq | protein | NM_001348636.5 | |||||||
| SwissProt | UniProtAcc | P35800 | |||||||
| UniProt_GCRP | UniProtAcc | P35800 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:22 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 06 Mar 2018 14:35:46 | WBPerson4025 | Event | Split_into | WBGene00302993 | ||||
| Split_into | WBGene00302993 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dpy | ||||||||
| Reference_allele | WBVar00142982 | ||||||||
| Allele | WBVar00088681 | Inferred_automatically | From strain object: CB4789 | ||||||
| WBVar00142922 | Inferred_automatically | From strain object: SV314 | |||||||
| WBVar00145480 | Inferred_automatically | From strain object: VC185 | |||||||
| WBVar00296642 | Inferred_automatically | From strain object: VC2985 | |||||||
| WBVar00088199 | |||||||||
| WBVar00242681 | |||||||||
| WBVar00143043 | |||||||||
| WBVar00088200 | |||||||||
| WBVar00143135 | |||||||||
| WBVar00241826 | |||||||||
| WBVar00143046 | |||||||||
| WBVar00143370 | |||||||||
| WBVar00143374 | |||||||||
| WBVar00143174 | |||||||||
| WBVar00088198 | |||||||||
| WBVar00142978 | |||||||||
| WBVar02147213 | |||||||||
| WBVar02157860 | |||||||||
| WBVar01499702 | |||||||||
| WBVar00739808 | |||||||||
| WBVar00739809 | |||||||||
| WBVar00739810 | |||||||||
| WBVar00739811 | |||||||||
| WBVar00739812 | |||||||||
| WBVar01498435 | |||||||||
| WBVar00739813 | |||||||||
| WBVar00739814 | |||||||||
| WBVar00739815 | |||||||||
| WBVar00241062 | |||||||||
| WBVar00739816 | |||||||||
| WBVar00739817 | |||||||||
| WBVar00739818 | |||||||||
| WBVar00739819 | |||||||||
| WBVar00739820 | |||||||||
| WBVar00739821 | |||||||||
| WBVar00739822 | |||||||||
| WBVar00739823 | |||||||||
| WBVar00739824 | |||||||||
| WBVar00739825 | |||||||||
| WBVar00739826 | |||||||||
| WBVar00739827 | |||||||||
| WBVar00054102 | |||||||||
| WBVar00368746 | |||||||||
| WBVar00368747 | |||||||||
| WBVar00054107 | |||||||||
| WBVar00368748 | |||||||||
| WBVar00142982 | |||||||||
| WBVar00144980 | |||||||||
| WBVar00314516 | |||||||||
| WBVar00242687 | |||||||||
| WBVar00054207 | |||||||||
| Possibly_affected_by | WBVar02152815 | ||||||||
| WBVar02152872 | |||||||||
| WBVar02157712 | |||||||||
| WBVar02158431 | |||||||||
| WBVar02158465 | |||||||||
| WBVar02158466 | |||||||||
| WBVar02158831 | |||||||||
| Legacy_information | e128 : small dumpy (non-roller); sometimes poor freezing. ES3 (all stages) ME1. NA > 10 (e223 sc48 (left roller dumpy) sc30ts (left roller dumpy at 25x) sc? (pka rol-7) etc.). | ||||||||
| [C.elegansII] e128 : small dumpy (non-roller); sometimes poor survival from freezing; non-null. Suppresses some alleles of glp-1, emb-5.ES3 (all stages) ME1. OA>10: e223, sc48 (left roller dumpy), sc30ts (pka rol-7, left roller dumpy at 25C),cn64 (dominant left roller), q291, s364fdi etc.Cloned: encodes collagen 41% identical to DPY-2. e128 is splicing defect, cg36 (left roller dumpy, ochre, probable null). [Brenner 1974; Levy et al. 1993; CH] | |||||||||
| Strain (668) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Contained_in_operon | CEOP5607 | ||||||||
| Ortholog (22) | |||||||||
| Paralog (161) | |||||||||
| Structured_description | Concise_description | A cuticle collagen protein that afffects body morphology and movement and genetically interacts with the sqt-1 collagen gene. | Paper_evidence | WBPaper00001792 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of collagen and cuticulin-based cuticle. Involved in several processes, including cuticle development involved in collagen and cuticulin-based cuticle molting cycle; locomotion; and post-embryonic body morphogenesis. Predicted to be part of collagen trimer. Used to study skin disease. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:37 | Homo sapiens | Paper_evidence | WBPaper00061220 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 02 May 2022 00:00:00 | ||||||||
| Models_disease_asserted | WBDOannot00001178 | ||||||||
| Molecular_info | Corresponding_CDS | T14B4.7 | |||||||
| Corresponding_CDS_history | T14B4.7:wp86 | ||||||||
| T14B4.7a:wp257 | |||||||||
| T14B4.7a:wp264 | |||||||||
| T14B4.7b:wp97 | |||||||||
| T14B4.7b:wp257 | |||||||||
| T14B4.7c:wp264 | |||||||||
| Corresponding_transcript | T14B4.7.1 | ||||||||
| Corresponding_transcript_history | T14B4.7b:wp264 | ||||||||
| Other_sequence | MHC07417_1 | ||||||||
| MH05682 | |||||||||
| PPC08679_1 | |||||||||
| Associated_feature | WBsf650168 | ||||||||
| WBsf650169 | |||||||||
| WBsf665638 | |||||||||
| WBsf223225 | |||||||||
| Experimental_info | RNAi_result (35) | ||||||||
| Expr_pattern | Expr1022469 | ||||||||
| Expr1030680 | |||||||||
| Expr1156899 | |||||||||
| Expr2011055 | |||||||||
| Expr2029292 | |||||||||
| Drives_construct | WBCnstr00037099 | ||||||||
| Construct_product | WBCnstr00037099 | ||||||||
| Regulate_expr_cluster | WBPaper00035873:dpy-10_regulated | ||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (274) | |||||||||
| Interaction (195) | |||||||||
| WBProcess | WBbiopr:00000124 | ||||||||
| Map_info | Map | II | Position | 0 | |||||
| Well_ordered | |||||||||
| Positive | Inside_rearr | mnDf40 | |||||||
| mC6 | |||||||||
| Positive_clone | T14B4 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| ZK857 | |||||||||
| Mapping_data | 2_point (51) | ||||||||
| Multi_point (202) | |||||||||
| Pos_neg_data (26) | |||||||||
| Landmark_gene | |||||||||
| Reference (203) | |||||||||
| Method | Gene |
