WormBase Tree Display for Gene: WBGene00001073
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| WBGene00001073 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F46E10 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | dpy-11 | Person_evidence | WBPerson261 | |||||
| Sequence_name | F46E10.9 | ||||||||
| Molecular_name | F46E10.9 | ||||||||
| F46E10.9.1 | |||||||||
| CE20819 | |||||||||
| F46E10.9.2 | |||||||||
| Other_name | CELE_F46E10.9 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | dpy-11 | ||||||||
| DB_info | Database | AceView | gene | 5G992 | |||||
| WormQTL | gene | WBGene00001073 | |||||||
| WormFlux | gene | WBGene00001073 | |||||||
| NDB | locus_tag | CELE_F46E10.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001073|UniProtKB=G5EC91 | |||||||
| family | PTHR46107 | ||||||||
| NCBI | gene | 179040 | |||||||
| RefSeq | protein | NM_001383321.2 | |||||||
| TREEFAM | TREEFAM_ID | TF106376 | |||||||
| TrEMBL | UniProtAcc | G5EC91 | |||||||
| UniProt_GCRP | UniProtAcc | G5EC91 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:22 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dpy | ||||||||
| Reference_allele | WBVar00143044 | ||||||||
| Allele (97) | |||||||||
| Legacy_information | e224 : medium dumpy. ES3 (adult) ES2 (larvae). ME2. NA > 10 (e33 e1180icr (these and most other alleles have much stronger dumpy ('piggy') phenotype) etc.). | ||||||||
| See also e33, e752, e1180, e1194, s360 | |||||||||
| [C.elegansII] e224 : medium dumpy. ES3 (adult) ES2 (larvae). ME2. Males Ram (lumpy rays) at25C. OA>10: e33, e1180icr (these and most other alleles have much stronger dumpy or 'piggy' phenotype) etc.), e455,e733, e752, s287 (induced on eT1), s10, s261, s360fdi etc. [Brenner 1974; Baird and Emmons 1990; CB] | |||||||||
| Strain (139) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00011338 | ||||||||
| 00011339 | |||||||||
| 00011340 | |||||||||
| 00011341 | |||||||||
| 00011342 | |||||||||
| 00011343 | |||||||||
| 00011344 | |||||||||
| 00011345 | |||||||||
| 00011346 | |||||||||
| Contained_in_operon | CEOP5120 | ||||||||
| Ortholog (41) | |||||||||
| Paralog (14) | |||||||||
| Structured_description | Automated_description | Enables protein-disulfide reductase activity. Involved in several processes, including cuticle development involved in collagen and cuticulin-based cuticle molting cycle; post-embryonic body morphogenesis; and protein folding. Located in endomembrane system. Expressed in several structures, including R1_hyp; R2_hyp; R3_hyp; R4_hyp; and R5_hyp. Is an ortholog of human TMX1 (thioredoxin related transmembrane protein 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F46E10.9 | |||||||
| Corresponding_transcript | F46E10.9.1 | ||||||||
| F46E10.9.2 | |||||||||
| Other_sequence (67) | |||||||||
| Associated_feature (20) | |||||||||
| Experimental_info | RNAi_result (20) | ||||||||
| Expr_pattern | Chronogram1745 | ||||||||
| Expr1854 | |||||||||
| Expr1855 | |||||||||
| Expr6089 | |||||||||
| Expr13275 | |||||||||
| Expr1026593 | |||||||||
| Expr1030681 | |||||||||
| Expr1151367 | |||||||||
| Expr2011056 | |||||||||
| Expr2029293 | |||||||||
| Drives_construct | WBCnstr00002463 | ||||||||
| WBCnstr00010487 | |||||||||
| WBCnstr00010488 | |||||||||
| WBCnstr00042718 | |||||||||
| Construct_product | WBCnstr00010488 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (192) | |||||||||
| Interaction (155) | |||||||||
| WBProcess | WBbiopr:00000124 | ||||||||
| Map_info | Map | V | Position | 0 | |||||
| Well_ordered | |||||||||
| Positive | Inside_rearr | sDf20 | |||||||
| sDf30 | |||||||||
| nDf1 | |||||||||
| nDf18 | |||||||||
| rT1 | |||||||||
| Positive_clone | F46E10 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| T04F11 | |||||||||
| Negative | Outside_rearr | sDf36 | |||||||
| eDf1 | |||||||||
| nDf42 | |||||||||
| Negative_clone | W01A11 | ||||||||
| Mapping_data | 2_point (100) | ||||||||
| Multi_point (259) | |||||||||
| Pos_neg_data (15) | |||||||||
| Landmark_gene | |||||||||
| Reference (113) | |||||||||
| Remark | Julia Pak rescued dpy-11 with T04F11 when she was a rotation student in my lab. | ||||||||
| Sequence connection from [Ko F] | |||||||||
| Method | Gene |
