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WormBase Tree Display for Gene: WBGene00001683

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Name Class

WBGene00001683SMapS_parentSequenceT09F3
IdentityVersion1
NameCGC_namegpd-1Person_evidenceWBPerson1051
Sequence_nameT09F3.3
Molecular_nameT09F3.3
T09F3.3.1
CE02343
Other_nameCELE_T09F3.3Accession_evidenceNDBBX284602
Public_namegpd-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:25WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgpd
Allele (23)
Legacy_information[C.elegansII] NMK. Encodes glyceraldehyde-3-phosphate-dehydrogenase, minor isozyme (GAPDHase-1), ubiquitous, predominant expression in embryo; sequence closest to gpd-4. [Barrios et al. 1989; HH]
RNASeq_FPKM (74)
GO_annotation (14)
Contained_in_operonCEOP2484
OrthologWBGene00024150Caenorhabditis briggsaeFrom_analysisOrthoMCL
WormBase-Compara
WBGene00024712Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00123586Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00057875Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00148223Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00152202Caenorhabditis brenneriFrom_analysisInparanoid_8
WormBase-Compara
WBGene00161625Caenorhabditis brenneriFrom_analysisInparanoid_8
WormBase-Compara
WBGene00132155Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00057911Caenorhabditis remaneiFrom_analysisInparanoid_8
WormBase-Compara
WBGene00102337Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00151788Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00225232Brugia malayiFrom_analysisWormBase-Compara
WBGene00225960Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g10866Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g8370Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g20867Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g20872Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g4854Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g18397Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g18612Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g15562Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP39.g3668Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g13637Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g2807Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cnig_chr_V.g16739Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_V.g16888Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold58.g348Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold58.g354Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02145.g25103Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_04643.g33418Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_20376Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_23329Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_019405Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_019456Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_50010500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g5720Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00248297Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00248298Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00256803Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00263559Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00266672Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00292118Trichuris murisFrom_analysisWormBase-Compara
SGD:S000003424Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
SGD:S000003588Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
SGD:S000003769Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0001092Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
FB:FBgn0034173Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Panther
PhylomeDB
ZFIN:ZDB-GENE-030115-1Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:4141Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
MGI:95640Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:3708786Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:3782011Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:2661Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1564958Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:1566089Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:7581466Rattus norvegicusFrom_analysisOMA
OrthoFinder
Panther
RGD:11474079Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:11507219Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:41326322Rattus norvegicusFrom_analysisOrthoFinder
Panther
PhylomeDB
ParalogWBGene00001686Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00001685Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
WBGene00001684Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
Structured_descriptionConcise_descriptiongpd-1 encodes one of four C. elegans glyceraldehyde-3-phosphate dehydrogenases (GAPDHs); by homology, GPD-1 is predicted to reversibly catalyze the oxidation and phosphorylation of glyceraldehyde-3-phosphate to 1,3-diphosphoglycerate during glycolysis; GPD-1 is required for embryogenesis, normal body morphology, and gonad development; in C. elegans, GPD-1 and GPD-4 constitute the minor GAPDH isoenzymes and are expressed primarily in embryos, in all cell types.Paper_evidenceWBPaper00000730
WBPaper00001143
Curator_confirmedWBPerson1843
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity. Predicted to be involved in glycolytic process. Predicted to be located in cytosol. Expressed in germ line. Human ortholog(s) of this gene implicated in Alzheimer's disease and lymphangioleiomyomatosis. Is an ortholog of human GAPDH (glyceraldehyde-3-phosphate dehydrogenase).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:10652Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:4141)
DOID:3319Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:4141)
Molecular_infoCorresponding_CDST09F3.3
Corresponding_transcriptT09F3.3.1
Other_sequence (202)
Associated_featureWBsf1013017
WBsf222004
Experimental_infoRNAi_resultWBRNAi00018506Inferred_automaticallyRNAi_primary
WBRNAi00052969Inferred_automaticallyRNAi_primary
WBRNAi00008168Inferred_automaticallyRNAi_primary
WBRNAi00008043Inferred_automaticallyRNAi_primary
WBRNAi00114592Inferred_automaticallyRNAi_primary
WBRNAi00046227Inferred_automaticallyRNAi_primary
WBRNAi00014257Inferred_automaticallyRNAi_primary
WBRNAi00115891Inferred_automaticallyRNAi_primary
Expr_patternExpr776
Expr4125
Expr1031003
Expr1156572
Expr2012205
Expr2030441
Drives_constructWBCnstr00036773
Construct_productWBCnstr00036773
Microarray_resultsSMD_T09F3.3
A_12_P101710
GPL19516_CGZ0034430
GPL19516_CGZ0034431
GPL21109_T09F3.3.1
GPL3518_CE02343
GPL8304_CE_WBGene00001683_A
GPL8304_CE_WBGene00001683_B
Expression_cluster (198)
InteractionWBInteraction000036340
WBInteraction000044291
WBInteraction000044292
WBInteraction000044293
WBInteraction000045992
WBInteraction000047359
WBInteraction000047360
WBInteraction000102281
WBInteraction000102289
WBInteraction000102691
WBInteraction000102883
WBInteraction000105141
WBInteraction000105142
WBInteraction000112579
WBInteraction000135543
WBInteraction000135557
WBInteraction000135565
WBInteraction000135597
WBInteraction000137980
WBInteraction000140827
WBInteraction000140839
WBInteraction000140859
WBInteraction000140860
WBInteraction000140862
WBInteraction000140864
WBInteraction000140871
WBInteraction000140887
WBInteraction000140897
WBInteraction000143152
WBInteraction000145301
WBInteraction000155185
WBInteraction000156358
WBInteraction000160381
WBInteraction000160392
WBInteraction000162887
WBInteraction000162957
WBInteraction000167376
WBInteraction000167446
WBInteraction000167862
WBInteraction000167868
WBInteraction000172125
WBInteraction000172822
WBInteraction000172830
WBInteraction000172838
WBInteraction000172846
WBInteraction000175527
WBInteraction000177124
WBInteraction000177396
WBInteraction000185148
WBInteraction000191802
WBInteraction000192893
WBInteraction000193795
WBInteraction000208284
WBInteraction000210572
WBInteraction000218989
WBInteraction000222530
WBInteraction000228957
WBInteraction000229816
WBInteraction000233092
WBInteraction000240461
WBInteraction000244678
WBInteraction000246522
WBInteraction000252325
WBInteraction000252760
WBInteraction000253931
WBInteraction000253933
WBInteraction000259287
WBInteraction000259980
WBInteraction000263325
WBInteraction000264477
WBInteraction000267121
WBInteraction000267275
WBInteraction000272802
WBInteraction000273866
WBInteraction000278843
WBInteraction000279251
WBInteraction000279391
WBInteraction000285642
WBInteraction000288368
WBInteraction000292299
WBInteraction000302542
WBInteraction000310286
WBInteraction000317929
WBInteraction000322756
WBInteraction000322757
WBInteraction000322758
WBInteraction000322759
WBInteraction000330644
WBInteraction000330870
WBInteraction000339862
WBInteraction000343406
WBInteraction000346033
WBInteraction000348592
WBInteraction000352238
WBInteraction000356400
WBInteraction000359710
WBInteraction000362726
WBInteraction000362990
WBInteraction000366445
WBInteraction000366594
WBInteraction000366811
WBInteraction000367202
WBInteraction000367879
WBInteraction000367986
WBInteraction000370166
WBInteraction000370369
WBInteraction000374059
WBInteraction000375012
WBInteraction000377027
WBInteraction000377888
WBInteraction000379807
WBInteraction000382458
WBInteraction000384958
WBInteraction000391882
WBInteraction000392413
WBInteraction000397333
WBInteraction000400466
WBInteraction000401562
WBInteraction000402567
WBInteraction000405069
WBInteraction000409872
WBInteraction000416147
WBInteraction000421448
WBInteraction000437899
WBInteraction000439690
WBInteraction000439835
WBInteraction000442736
WBInteraction000446342
WBInteraction000453705
WBInteraction000454854
WBInteraction000455699
WBInteraction000456131
WBInteraction000458035
WBInteraction000458497
WBInteraction000461289
WBInteraction000463382
WBInteraction000463408
WBInteraction000464267
WBInteraction000464728
WBInteraction000465539
WBInteraction000466549
WBInteraction000466816
WBInteraction000468684
WBInteraction000468800
WBInteraction000468878
WBInteraction000469563
WBInteraction000471611
WBInteraction000473644
WBInteraction000540301
WBInteraction000549553
WBInteraction000550360
WBInteraction000562303
WBInteraction000563334
WBInteraction000566347
WBInteraction000566626
WBInteraction000569002
WBInteraction000569622
WBInteraction000570434
WBInteraction000572376
WBInteraction000573426
WBInteraction000579362
WBInteraction000580018
Map_infoMapIIPosition2.55928Error0.007034
PositivePositive_cloneHH#7B
T09F3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (25)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene