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WormBase Tree Display for Gene: WBGene00001683

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Name Class

WBGene00001683SMapS_parentSequenceT09F3
IdentityVersion1
Name (5)
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:25WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgpd
Allele (23)
Legacy_information[C.elegansII] NMK. Encodes glyceraldehyde-3-phosphate-dehydrogenase, minor isozyme (GAPDHase-1), ubiquitous, predominant expression in embryo; sequence closest to gpd-4. [Barrios et al. 1989; HH]
RNASeq_FPKM (74)
GO_annotation (14)
Contained_in_operonCEOP2484
OrthologWBGene00024150Caenorhabditis briggsaeFrom_analysisOrthoMCL
WormBase-Compara
WBGene00024712Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00123586Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00057875Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00148223Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00152202Caenorhabditis brenneriFrom_analysisInparanoid_8
WormBase-Compara
WBGene00161625Caenorhabditis brenneriFrom_analysisInparanoid_8
WormBase-Compara
WBGene00132155Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00057911Caenorhabditis remaneiFrom_analysisInparanoid_8
WormBase-Compara
WBGene00102337Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00151788Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00225232Brugia malayiFrom_analysisWormBase-Compara
WBGene00225960Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g10866Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g8370Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g20867Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g20872Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g4854Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g18397Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g18612Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g15562Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP39.g3668Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g13637Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g2807Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cnig_chr_V.g16739Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_V.g16888Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold58.g348Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold58.g354Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02145.g25103Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_04643.g33418Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_20376Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_23329Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_019405Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_019456Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_50010500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g5720Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00248297Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00248298Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00256803Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00263559Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00266672Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00292118Trichuris murisFrom_analysisWormBase-Compara
SGD:S000003424Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
SGD:S000003588Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
SGD:S000003769Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0001092Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
FB:FBgn0034173Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Panther
PhylomeDB
ZFIN:ZDB-GENE-030115-1Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:4141Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
MGI:95640Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:3708786Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:3782011Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:2661Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1564958Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:1566089Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:7581466Rattus norvegicusFrom_analysisOMA
OrthoFinder
Panther
RGD:11474079Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
RGD:11507219Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:41326322Rattus norvegicusFrom_analysisOrthoFinder
Panther
PhylomeDB
ParalogWBGene00001686Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00001685Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
WBGene00001684Caenorhabditis elegansFrom_analysisInparanoid_8
Panther
WormBase-Compara
Structured_description (2)
Disease_infoPotential_modelDOID:10652Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:4141)
DOID:3319Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:4141)
Molecular_infoCorresponding_CDST09F3.3
Corresponding_transcriptT09F3.3.1
Other_sequence (202)
Associated_featureWBsf1013017
WBsf222004
Experimental_infoRNAi_resultWBRNAi00018506Inferred_automaticallyRNAi_primary
WBRNAi00052969Inferred_automaticallyRNAi_primary
WBRNAi00008168Inferred_automaticallyRNAi_primary
WBRNAi00008043Inferred_automaticallyRNAi_primary
WBRNAi00114592Inferred_automaticallyRNAi_primary
WBRNAi00046227Inferred_automaticallyRNAi_primary
WBRNAi00014257Inferred_automaticallyRNAi_primary
WBRNAi00115891Inferred_automaticallyRNAi_primary
Expr_patternExpr776
Expr4125
Expr1031003
Expr1156572
Expr2012205
Expr2030441
Drives_constructWBCnstr00036773
Construct_productWBCnstr00036773
Microarray_resultsSMD_T09F3.3
A_12_P101710
GPL19516_CGZ0034430
GPL19516_CGZ0034431
GPL21109_T09F3.3.1
GPL3518_CE02343
GPL8304_CE_WBGene00001683_A
GPL8304_CE_WBGene00001683_B
Expression_cluster (198)
Interaction (162)
Map_infoMapIIPosition2.55928Error0.007034
PositivePositive_cloneHH#7B
T09F3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (25)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene