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WormBase Tree Display for Gene: WBGene00003231

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Name Class

WBGene00003231EvidenceCGC_data_submission
SMapS_parentSequenceAH6
IdentityVersion1
NameCGC_namemex-6Person_evidenceWBPerson498
Sequence_nameAH6.5
Molecular_nameAH6.5
AH6.5.1
CE26846
Other_nameCELE_AH6.5Accession_evidenceNDBBX284602
Public_namemex-6
DB_infoDatabaseAceViewgene2J815
WormQTLgeneWBGene00003231
WormFluxgeneWBGene00003231
NDBlocus_tagCELE_AH6.5
PanthergeneCAEEL|WormBase=WBGene00003231|UniProtKB=Q09436
familyPTHR12547
NCBIgene174504
RefSeqproteinNM_063642.7
SwissProtUniProtAccQ09436
TREEFAMTREEFAM_IDTF322043
UniProt_GCRPUniProtAccQ09436
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:31WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmex
Allele (40)
Legacy_information[Priess, J./Plasterk,] pk440: Strain is viable, but enhances phenotype of maternal-effect lethal mutation mex-5(zu199). Embryos from mex-6(pk440);mex-5(zu199) hermaphrodites produce only hypodermis and muscle cell types.
StrainWBStrain00022453
WBStrain00022485
WBStrain00022487
RNASeq_FPKM (74)
GO_annotation (16)
Ortholog (29)
Paralog (20)
Structured_descriptionConcise_descriptionmex-6 encodes a CCCH zinc-finger protein highly similar to MEX-5 that functions with MEX-5 to affect embryonic viability, establish soma germline asymmetry in embryos and establish PIE-1, MEX-1, and POS-1 asymmetry in embryos, and also affects formation of intestinal cells; MEX-6 and MEX-5 may act downstream of the PAR proteins.Paper_evidenceWBPaper00004540
WBPaper00005160
WBPaper00005654
Curator_confirmedWBPerson48
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnables mRNA 3'-UTR binding activity; protein domain specific binding activity; and protein kinase binding activity. Involved in regulation of protein localization. Located in P granule. Expressed in AB; ABa; ABp; and germ line.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSAH6.5
Corresponding_CDS_historyAH6.5:wp12
AH6.5:wp43
Corresponding_transcriptAH6.5.1
Other_sequenceCGC00109_1
Associated_featureWBsf028078
WBsf976539
WBsf976540
WBsf976541
WBsf976542
WBsf978799
WBsf989072
WBsf221892
WBsf221893
Transcription_factorWBTranscriptionFactor000454
Experimental_infoRNAi_resultWBRNAi00101771Inferred_automaticallyRNAi_primary
WBRNAi00083280Inferred_automaticallyRNAi_primary
WBRNAi00066961Inferred_automaticallyRNAi_primary
WBRNAi00083284Inferred_automaticallyRNAi_primary
WBRNAi00000145Inferred_automaticallyRNAi_primary
WBRNAi00087569Inferred_automaticallyRNAi_primary
WBRNAi00104035Inferred_automaticallyRNAi_primary
WBRNAi00083261Inferred_automaticallyRNAi_primary
WBRNAi00087572Inferred_automaticallyRNAi_primary
WBRNAi00083266Inferred_automaticallyRNAi_primary
WBRNAi00105929Inferred_automaticallyRNAi_primary
WBRNAi00087570Inferred_automaticallyRNAi_primary
WBRNAi00093712Inferred_automaticallyRNAi_primary
WBRNAi00104048Inferred_automaticallyRNAi_primary
WBRNAi00083246Inferred_automaticallyRNAi_primary
WBRNAi00104039Inferred_automaticallyRNAi_primary
WBRNAi00007867Inferred_automaticallyRNAi_primary
WBRNAi00104037Inferred_automaticallyRNAi_primary
WBRNAi00008278Inferred_automaticallyRNAi_primary
WBRNAi00104038Inferred_automaticallyRNAi_primary
WBRNAi00087568Inferred_automaticallyRNAi_primary
WBRNAi00075707Inferred_automaticallyRNAi_primary
WBRNAi00024345Inferred_automaticallyRNAi_primary
WBRNAi00104046Inferred_automaticallyRNAi_primary
WBRNAi00067911Inferred_automaticallyRNAi_primary
WBRNAi00078839Inferred_automaticallyRNAi_primary
WBRNAi00104032Inferred_automaticallyRNAi_primary
WBRNAi00078507Inferred_automaticallyRNAi_primary
WBRNAi00083256Inferred_automaticallyRNAi_primary
WBRNAi00104047Inferred_automaticallyRNAi_primary
WBRNAi00104041Inferred_automaticallyRNAi_primary
WBRNAi00104051Inferred_automaticallyRNAi_primary
WBRNAi00104031Inferred_automaticallyRNAi_primary
WBRNAi00104050Inferred_automaticallyRNAi_primary
WBRNAi00075706Inferred_automaticallyRNAi_primary
WBRNAi00104042Inferred_automaticallyRNAi_primary
WBRNAi00083237Inferred_automaticallyRNAi_primary
WBRNAi00067497Inferred_automaticallyRNAi_primary
WBRNAi00104027Inferred_automaticallyRNAi_primary
WBRNAi00104033Inferred_automaticallyRNAi_primary
WBRNAi00083247Inferred_automaticallyRNAi_primary
WBRNAi00067725Inferred_automaticallyRNAi_primary
WBRNAi00104029Inferred_automaticallyRNAi_primary
WBRNAi00038623Inferred_automaticallyRNAi_primary
WBRNAi00104034Inferred_automaticallyRNAi_primary
WBRNAi00104040Inferred_automaticallyRNAi_primary
WBRNAi00081972Inferred_automaticallyRNAi_primary
WBRNAi00101774Inferred_automaticallyRNAi_primary
WBRNAi00104043Inferred_automaticallyRNAi_primary
WBRNAi00083248Inferred_automaticallyRNAi_primary
WBRNAi00083260Inferred_automaticallyRNAi_primary
WBRNAi00104026Inferred_automaticallyRNAi_primary
WBRNAi00104044Inferred_automaticallyRNAi_primary
WBRNAi00104028Inferred_automaticallyRNAi_primary
WBRNAi00067414Inferred_automaticallyRNAi_primary
WBRNAi00087567Inferred_automaticallyRNAi_primary
WBRNAi00104052Inferred_automaticallyRNAi_primary
WBRNAi00083254Inferred_automaticallyRNAi_primary
WBRNAi00083263Inferred_automaticallyRNAi_primary
WBRNAi00104049Inferred_automaticallyRNAi_primary
WBRNAi00087571Inferred_automaticallyRNAi_primary
WBRNAi00083249Inferred_automaticallyRNAi_primary
WBRNAi00104030Inferred_automaticallyRNAi_primary
WBRNAi00104036Inferred_automaticallyRNAi_primary
WBRNAi00083285Inferred_automaticallyRNAi_primary
WBRNAi00104045Inferred_automaticallyRNAi_primary
WBRNAi00083258Inferred_automaticallyRNAi_primary
WBRNAi00083283Inferred_automaticallyRNAi_primary
Expr_patternExpr2463
Expr4100
Expr10817
Expr1016913
Expr1031528
Expr1142831
Expr2013544
Expr2031778
Drives_constructWBCnstr00036173
WBCnstr00039800
Construct_productWBCnstr00000077
WBCnstr00005217
WBCnstr00036173
WBCnstr00039800
AntibodyWBAntibody00000903
Microarray_results (21)
Expression_cluster (202)
Interaction (365)
WBProcessWBbiopr:00000017
Map_infoMapIIPosition1.49849Error0.002846
PositivePositive_cloneAH6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4488
Pseudo_map_position
Reference (58)
RemarkSequence analysis of the mex-6(pk440) allele showed that bases 12737- 15477 corresponding to the AH6 cosmid were deleted. This work was done in the lab of Ron Plasterk.
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene