WormBase Tree Display for Gene: WBGene00003231
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WBGene00003231 | Evidence | CGC_data_submission | |||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | AH6 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | mex | ||||||
Allele (40) | |||||||
Legacy_information | [Priess, J./Plasterk,] pk440: Strain is viable, but enhances phenotype of maternal-effect lethal mutation mex-5(zu199). Embryos from mex-6(pk440);mex-5(zu199) hermaphrodites produce only hypodermis and muscle cell types. | ||||||
Strain | WBStrain00022453 | ||||||
WBStrain00022485 | |||||||
WBStrain00022487 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (16) | |||||||
Ortholog (29) | |||||||
Paralog (20) | |||||||
Structured_description | Concise_description | mex-6 encodes a CCCH zinc-finger protein highly similar to MEX-5 that functions with MEX-5 to affect embryonic viability, establish soma germline asymmetry in embryos and establish PIE-1, MEX-1, and POS-1 asymmetry in embryos, and also affects formation of intestinal cells; MEX-6 and MEX-5 may act downstream of the PAR proteins. | Paper_evidence | WBPaper00004540 | |||
WBPaper00005160 | |||||||
WBPaper00005654 | |||||||
Curator_confirmed | WBPerson48 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enables mRNA 3'-UTR binding activity; protein domain specific binding activity; and protein kinase binding activity. Involved in regulation of protein localization. Located in P granule. Expressed in AB; ABa; ABp; and germ line. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | AH6.5 | |||||
Corresponding_CDS_history | AH6.5:wp12 | ||||||
AH6.5:wp43 | |||||||
Corresponding_transcript | AH6.5.1 | ||||||
Other_sequence | CGC00109_1 | ||||||
Associated_feature | WBsf028078 | ||||||
WBsf976539 | |||||||
WBsf976540 | |||||||
WBsf976541 | |||||||
WBsf976542 | |||||||
WBsf978799 | |||||||
WBsf989072 | |||||||
WBsf221892 | |||||||
WBsf221893 | |||||||
Transcription_factor | WBTranscriptionFactor000454 | ||||||
Experimental_info | RNAi_result (68) | ||||||
Expr_pattern | Expr2463 | ||||||
Expr4100 | |||||||
Expr10817 | |||||||
Expr1016913 | |||||||
Expr1031528 | |||||||
Expr1142831 | |||||||
Expr2013544 | |||||||
Expr2031778 | |||||||
Drives_construct | WBCnstr00036173 | ||||||
WBCnstr00039800 | |||||||
Construct_product | WBCnstr00000077 | ||||||
WBCnstr00005217 | |||||||
WBCnstr00036173 | |||||||
WBCnstr00039800 | |||||||
Antibody | WBAntibody00000903 | ||||||
Microarray_results (21) | |||||||
Expression_cluster (202) | |||||||
Interaction (365) | |||||||
WBProcess | WBbiopr:00000017 | ||||||
Map_info | Map | II | Position | 1.49849 | Error | 0.002846 | |
Positive | Positive_clone | AH6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 4488 | |||||
Pseudo_map_position | |||||||
Reference (58) | |||||||
Remark | Sequence analysis of the mex-6(pk440) allele showed that bases 12737- 15477 corresponding to the AH6 cosmid were deleted. This work was done in the lab of Ron Plasterk. | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |