WormBase Tree Display for Gene: WBGene00003231
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WBGene00003231 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | AH6 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | mex-6 | Person_evidence | WBPerson498 | |||||
Sequence_name | AH6.5 | ||||||||
Molecular_name | AH6.5 | ||||||||
AH6.5.1 | |||||||||
CE26846 | |||||||||
Other_name | CELE_AH6.5 | Accession_evidence | NDB | BX284602 | |||||
Public_name | mex-6 | ||||||||
DB_info | Database | AceView | gene | 2J815 | |||||
WormQTL | gene | WBGene00003231 | |||||||
WormFlux | gene | WBGene00003231 | |||||||
NDB | locus_tag | CELE_AH6.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003231|UniProtKB=Q09436 | |||||||
family | PTHR12547 | ||||||||
NCBI | gene | 174504 | |||||||
RefSeq | protein | NM_063642.7 | |||||||
SwissProt | UniProtAcc | Q09436 | |||||||
TREEFAM | TREEFAM_ID | TF322043 | |||||||
UniProt_GCRP | UniProtAcc | Q09436 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | mex | ||||||||
Allele (40) | |||||||||
Legacy_information | [Priess, J./Plasterk,] pk440: Strain is viable, but enhances phenotype of maternal-effect lethal mutation mex-5(zu199). Embryos from mex-6(pk440);mex-5(zu199) hermaphrodites produce only hypodermis and muscle cell types. | ||||||||
Strain | WBStrain00022453 | ||||||||
WBStrain00022485 | |||||||||
WBStrain00022487 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (16) | |||||||||
Ortholog (29) | |||||||||
Paralog (20) | |||||||||
Structured_description | Concise_description | mex-6 encodes a CCCH zinc-finger protein highly similar to MEX-5 that functions with MEX-5 to affect embryonic viability, establish soma germline asymmetry in embryos and establish PIE-1, MEX-1, and POS-1 asymmetry in embryos, and also affects formation of intestinal cells; MEX-6 and MEX-5 may act downstream of the PAR proteins. | Paper_evidence | WBPaper00004540 | |||||
WBPaper00005160 | |||||||||
WBPaper00005654 | |||||||||
Curator_confirmed | WBPerson48 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enables mRNA 3'-UTR binding activity; protein domain specific binding activity; and protein kinase binding activity. Involved in regulation of protein localization. Located in P granule. Expressed in AB; ABa; ABp; and germ line. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | AH6.5 | |||||||
Corresponding_CDS_history | AH6.5:wp12 | ||||||||
AH6.5:wp43 | |||||||||
Corresponding_transcript | AH6.5.1 | ||||||||
Other_sequence | CGC00109_1 | ||||||||
Associated_feature | WBsf028078 | ||||||||
WBsf976539 | |||||||||
WBsf976540 | |||||||||
WBsf976541 | |||||||||
WBsf976542 | |||||||||
WBsf978799 | |||||||||
WBsf989072 | |||||||||
WBsf221892 | |||||||||
WBsf221893 | |||||||||
Transcription_factor | WBTranscriptionFactor000454 | ||||||||
Experimental_info | RNAi_result (68) | ||||||||
Expr_pattern | Expr2463 | ||||||||
Expr4100 | |||||||||
Expr10817 | |||||||||
Expr1016913 | |||||||||
Expr1031528 | |||||||||
Expr1142831 | |||||||||
Expr2013544 | |||||||||
Expr2031778 | |||||||||
Drives_construct | WBCnstr00036173 | ||||||||
WBCnstr00039800 | |||||||||
Construct_product | WBCnstr00000077 | ||||||||
WBCnstr00005217 | |||||||||
WBCnstr00036173 | |||||||||
WBCnstr00039800 | |||||||||
Antibody | WBAntibody00000903 | ||||||||
Microarray_results (21) | |||||||||
Expression_cluster (202) | |||||||||
Interaction (365) | |||||||||
WBProcess | WBbiopr:00000017 | ||||||||
Map_info (4) | |||||||||
Reference (58) | |||||||||
Remark | Sequence analysis of the mex-6(pk440) allele showed that bases 12737- 15477 corresponding to the AH6 cosmid were deleted. This work was done in the lab of Ron Plasterk. | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |