WormBase Tree Display for Gene: WBGene00003280
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| WBGene00003280 | Evidence | Paper_evidence | WBPaper00004928 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPaper00004927 | |||||||||
| SMap | S_parent | Sequence | Y37A1B | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-52 | Person_evidence | WBPerson18 | |||||
| Sequence_name | Y37A1B.16 | ||||||||
| Molecular_name | Y37A1B.16 | ||||||||
| Y37A1B.16a | |||||||||
| Y37A1B.16b | |||||||||
| Other_name | cel-mir-52 | Remark | miRBase V21 import | ||||||
| Cel-Mir-52-P1 | Remark | MirGeneDB 2.1 import | |||||||
| CELE_Y37A1B.16 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | mir-52 | ||||||||
| DB_info | Database | miRBase | acc | MI0000023 | |||||
| SignaLink | mirna | cel-mir-52 | |||||||
| MirGeneDB | cel | Cel-Mir-52-P1 | |||||||
| NDB | locus_tag | CELE_Y37A1B.16 | |||||||
| NCBI | gene | 260223 | |||||||
| RefSeq | protein | NR_000450.2 | |||||||
| RNAcentral | URSid | URS00003074BE | |||||||
| URS0000487FD2 | |||||||||
| URS00004ABB6B | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele (12) | |||||||||
| Strain | WBStrain00027407 | ||||||||
| WBStrain00027417 | |||||||||
| WBStrain00027572 | |||||||||
| WBStrain00027578 | |||||||||
| WBStrain00050744 | |||||||||
| In_cluster | MIR-52 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-52 encodes a microRNA (miRNA), a small noncoding RNA that is likely involved in posttranscriptional regulation of gene expression; miR-52 is expressed at highest levels in L1 larvae, but is also detected at all other stages of development and in him-8 mutant animals and dauer and starved L1 larvae; biochemical studies indicate that miR-52 appears to be associated with distinct ribonucleoprotein complexes at different stages of development. | Paper_evidence | WBPaper00004928 | |||||
| WBPaper00006077 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Expressed in several structures, including arcade cell; coelomocyte; gonad; hypodermis; and vulva. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | Y37A1B.16 | |||||||
| Y37A1B.16a | |||||||||
| Y37A1B.16b | |||||||||
| Other_sequence | AJ487576 | ||||||||
| Associated_feature | WBsf979117 | ||||||||
| WBsf998494 | |||||||||
| WBsf998495 | |||||||||
| WBsf1018591 | |||||||||
| WBsf1018592 | |||||||||
| Experimental_info | Expr_pattern | Expr1665 | |||||||
| Expr1672 | |||||||||
| Expr2483 | |||||||||
| Expr8457 | |||||||||
| Expr9255 | |||||||||
| Drives_construct | WBCnstr00005515 | ||||||||
| WBCnstr00006124 | |||||||||
| WBCnstr00006155 | |||||||||
| WBCnstr00013854 | |||||||||
| WBCnstr00016906 | |||||||||
| Construct_product | WBCnstr00006155 | ||||||||
| WBCnstr00006512 | |||||||||
| WBCnstr00006513 | |||||||||
| WBCnstr00006514 | |||||||||
| Expression_cluster (26) | |||||||||
| Interaction (14) | |||||||||
| Map_info | Map | IV | Position | 11.1729 | Error | 0.004674 | |||
| Positive | Positive_clone | Y37A1B | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (19) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
