WormBase Tree Display for Gene: WBGene00003791
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| WBGene00003791 | SMap | S_parent | Sequence | F07A11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | npp-5 | Person_evidence | WBPerson1780 | |||||
| Sequence_name | F07A11.3 | ||||||||
| Molecular_name | F07A11.3 | ||||||||
| F07A11.3.1 | |||||||||
| CE03145 | |||||||||
| Other_name | Nup107 | Paper_evidence | WBPaper00026834 | ||||||
| CELE_F07A11.3 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | npp-5 | ||||||||
| DB_info | Database | AceView | gene | 2L888 | |||||
| WormQTL | gene | WBGene00003791 | |||||||
| WormFlux | gene | WBGene00003791 | |||||||
| NDB | locus_tag | CELE_F07A11.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003791|UniProtKB=Q19131 | |||||||
| family | PTHR13003 | ||||||||
| NCBI | gene | 174779 | |||||||
| RefSeq | protein | NM_064080.6 | |||||||
| SwissProt | UniProtAcc | Q19131 | |||||||
| UniProt_GCRP | UniProtAcc | Q19131 | |||||||
| OMIM | gene | 607617 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 15 Mar 2007 08:57:28 | WBPerson2970 | Name_change | Other_name | Nup107 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | npp | ||||||||
| Allele (69) | |||||||||
| Strain | WBStrain00036637 | ||||||||
| WBStrain00003837 | |||||||||
| WBStrain00003840 | |||||||||
| WBStrain00003841 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (37) | |||||||||
| Contained_in_operon | CEOP2718 | ||||||||
| Ortholog (31) | |||||||||
| Structured_description | Automated_description | Predicted to be a structural constituent of nuclear pore. Involved in several processes, including kinetochore assembly; protein localization to kinetochore; and regulation of nucleus size. Located in nuclear membrane. Part of nuclear pore. Human ortholog(s) of this gene implicated in Galloway-Mowat syndrome; nephrotic syndrome type 11; and ovarian dysgenesis 6. Is an ortholog of human NUP107 (nucleoporin 107). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080694 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:29914) | ||||
| DOID:0080498 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:29914) | ||||||
| DOID:0080385 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:29914) | ||||||
| Molecular_info | Corresponding_CDS | F07A11.3 | |||||||
| Corresponding_transcript | F07A11.3.1 | ||||||||
| Other_sequence | CBC07538_1 | ||||||||
| CR03653 | |||||||||
| CRC05182_1 | |||||||||
| CR04595 | |||||||||
| CR03960 | |||||||||
| CRC05640_1 | |||||||||
| Associated_feature | WBsf650602 | ||||||||
| WBsf666172 | |||||||||
| WBsf223966 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr1027606 | ||||||||
| Expr1031777 | |||||||||
| Expr1147819 | |||||||||
| Expr2014390 | |||||||||
| Expr2032631 | |||||||||
| Drives_construct | WBCnstr00035865 | ||||||||
| Construct_product | WBCnstr00005566 | ||||||||
| WBCnstr00014542 | |||||||||
| WBCnstr00035865 | |||||||||
| Antibody | WBAntibody00001891 | ||||||||
| WBAntibody00002304 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (110) | |||||||||
| Interaction (164) | |||||||||
| Map_info | Map | II | Position | 3.78634 | Error | 0.003937 | |||
| Positive | Positive_clone | F07A11 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006202 | ||||||||
| WBPaper00026834 | |||||||||
| WBPaper00032497 | |||||||||
| WBPaper00036964 | |||||||||
| WBPaper00040620 | |||||||||
| WBPaper00040897 | |||||||||
| WBPaper00061547 | |||||||||
| WBPaper00063941 | |||||||||
| WBPaper00064641 | |||||||||
| WBPaper00065742 | |||||||||
| Remark | Sequence connection from [Askjaer P, Mattaj IW]. krb 13/11/01 | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
