WormBase Tree Display for Gene: WBGene00003889
expand all nodes | collapse all nodes | view schema
| WBGene00003889 | SMap | S_parent | Sequence | B0212 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | osm-9 | Person_evidence | WBPerson242 | |||||
| Sequence_name | B0212.5 | ||||||||
| Molecular_name | B0212.5 | ||||||||
| B0212.5.1 | |||||||||
| CE20445 | |||||||||
| Other_name | nss-2 | ||||||||
| CELE_B0212.5 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | osm-9 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | osm | ||||||||
| Allele (120) | |||||||||
| Legacy_information | [C.elegansII] n1601 : defective in osmotic avoidance, also in nose touch avoidance (Not); Adp (partly defective adaptation to isoamyl alcohol and butanone); normal chemotaxis.OA5: n1516, n1603, n2473, ky10 (similar). [Colbert & Bargmann 1995; JT; KP; MT] | ||||||||
| Strain | WBStrain00023453 | ||||||||
| WBStrain00036458 | |||||||||
| WBStrain00005214 | |||||||||
| WBStrain00007483 | |||||||||
| WBStrain00052609 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00010338 | ||||||||
| 00010339 | |||||||||
| 00010340 | |||||||||
| 00010341 | |||||||||
| 00010342 | |||||||||
| 00010343 | |||||||||
| 00010344 | |||||||||
| 00010345 | |||||||||
| 00010346 | |||||||||
| 00010347 | |||||||||
| 00010348 | |||||||||
| 00010349 | |||||||||
| 00010350 | |||||||||
| 00010351 | |||||||||
| 00010352 | |||||||||
| 00010353 | |||||||||
| 00010354 | |||||||||
| 00010355 | |||||||||
| 00010356 | |||||||||
| 00010357 | |||||||||
| 00010358 | |||||||||
| 00010359 | |||||||||
| 00010360 | |||||||||
| 00010361 | |||||||||
| 00010362 | |||||||||
| 00010363 | |||||||||
| 00010364 | |||||||||
| 00010365 | |||||||||
| 00010366 | |||||||||
| 00111960 | |||||||||
| 00111961 | |||||||||
| 00111962 | |||||||||
| 00111963 | |||||||||
| Ortholog (45) | |||||||||
| Paralog | WBGene00003838 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003839 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003840 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003841 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | osm-9 encodes a TRPV channel homologous to capsaicin receptors; osm-9 is involved in sensory responses to a subset of chemical stimuli and to ASH neuron-mediated osmotic and mechanical stimuli; OSM-9 is also involved in adaptation to volatile odorants and salts; OSM-9 is expressed in a variety of sensory neurons and shows neuron-specific localization to either the cell body or the cilium. | Paper_evidence | WBPaper00002166 | |||||
| WBPaper00002930 | |||||||||
| WBPaper00005150 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 20 Apr 2011 00:00:00 | ||||||||
| Automated_description | Enables calcium channel activity and temperature-gated cation channel activity. Involved in several processes, including heat acclimation; negative adaptation of signaling pathway; and nervous system process. Located in neuronal cell body; non-motile cilium; and perinuclear region of cytoplasm. Expressed in RIG; head mesodermal cell; rectal gland cell; sensory neurons; and uterine toroidal epithelial cell. Human ortholog(s) of this gene implicated in several diseases, including keratosis (multiple); motor neuron disease (multiple); and osteochondrodysplasia (multiple). Is an ortholog of human TRPV3 (transient receptor potential cation channel subfamily V member 3); TRPV4 (transient receptor potential cation channel subfamily V member 4); and TRPV5 (transient receptor potential cation channel subfamily V member 5). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (17) | ||||||||
| Molecular_info | Corresponding_CDS | B0212.5 | |||||||
| Corresponding_transcript | B0212.5.1 | ||||||||
| Other_sequence (14) | |||||||||
| Associated_feature | WBsf667839 | ||||||||
| WBsf995982 | |||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern (12) | |||||||||
| Drives_construct | WBCnstr00000837 | ||||||||
| WBCnstr00005979 | |||||||||
| WBCnstr00008561 | |||||||||
| WBCnstr00010985 | |||||||||
| WBCnstr00010991 | |||||||||
| WBCnstr00011000 | |||||||||
| WBCnstr00011004 | |||||||||
| WBCnstr00012945 | |||||||||
| WBCnstr00023098 | |||||||||
| WBCnstr00035811 | |||||||||
| Construct_product | WBCnstr00000837 | ||||||||
| WBCnstr00006801 | |||||||||
| WBCnstr00010991 | |||||||||
| WBCnstr00011000 | |||||||||
| WBCnstr00011004 | |||||||||
| WBCnstr00012945 | |||||||||
| WBCnstr00020618 | |||||||||
| WBCnstr00035811 | |||||||||
| Regulate_expr_cluster | WBPaper00049594:osm-9(ok1677)_NaCl(200mM)_upregulate | ||||||||
| WBPaper00049594:osm-9(ok1677)_upregulated | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (103) | |||||||||
| Interaction (116) | |||||||||
| Anatomy_function | WBbtf0291 | ||||||||
| WBProcess | WBbiopr:00000002 | ||||||||
| Map_info | Map | IV | Position | -3.15659 | Error | 0.016734 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | B0212 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| CX#2-12 | |||||||||
| Mapping_data | 2_point | 3729 | |||||||
| 3730 | |||||||||
| Multi_point | 1365 | ||||||||
| 1366 | |||||||||
| Reference (225) | |||||||||
| Remark | Possibly homologous to mammalian capsaicin receptor VR1. Some osm-9 mutants are sensitive to capsaicin.[bionet.celegans from Olsen] | Curator_confirmed | WBPerson1250 | ||||||
| Method | Gene |
