WormBase Tree Display for Gene: WBGene00006782
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| WBGene00006782 | SMap | S_parent | Sequence | C04F5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | unc-46 | Paper_evidence | WBPaper00000031 | |||||
| Sequence_name | C04F5.3 | ||||||||
| Molecular_name | C04F5.3 | ||||||||
| C04F5.3.1 | |||||||||
| CE27791 | |||||||||
| Other_name | CELE_C04F5.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | unc-46 | ||||||||
| DB_info | Database | AceView | gene | 5F576 | |||||
| WormQTL | gene | WBGene00006782 | |||||||
| WormFlux | gene | WBGene00006782 | |||||||
| NDB | locus_tag | CELE_C04F5.3 | |||||||
| NCBI | gene | 178897 | |||||||
| RefSeq | protein | NM_071964.5 | |||||||
| TREEFAM | TREEFAM_ID | TF320931 | |||||||
| TrEMBL | UniProtAcc | Q9GZD5 | |||||||
| UniProt_GCRP | UniProtAcc | Q9GZD5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:42 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 23 Mar 2005 14:05:09 | WBPerson2970 | Event | Acquires_merge | WBGene00015445 | ||||
| Acquires_merge | WBGene00015445 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | unc | ||||||||
| Reference_allele | WBVar00143011 | ||||||||
| Allele (38) | |||||||||
| Legacy_information | e177 : shrinker contracts both dorsally and ventrally when prodded slow good forward movement poor backing; slightly small. ES3 ME2. NA3 (e300 e642). | ||||||||
| [C.elegansII] e177 : shrinker contracts both dorsally and ventrally when prodded, slow, good forward movement, poor backing; slightly small. ES3 ME2. OA2: e300, e642. [Brenner 1974; McIntire et al. 1993; MT] | |||||||||
| Strain (163) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00093030 | ||||||||
| 00093031 | |||||||||
| Ortholog | WBGene00052707 | Caenorhabditis remanei | From_analysis | OMA | |||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00030426 | Caenorhabditis briggsae | From_analysis | Hillier-set | ||||||
| OrthoMCL | |||||||||
| OMA | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00162089 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00206855 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00030424 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | ||||||
| WBGene00222210 | Brugia malayi | From_analysis | WormBase-Compara | ||||||
| CBOVI.g389 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
| CSP21.g7174 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
| CSP26.g20268 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
| CSP28.g6840 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
| CSP29.g6554 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
| CSP31.g24822 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
| CSP32.g15054 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
| CSP38.g8059 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
| CSP39.g2252 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
| CSP40.g820 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
| Cang_2012_03_13_00124.g5004 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
| Cni-unc-46 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| Csp11.Scaffold629.g13123 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
| Csp5_scaffold_00988.g17350 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
| FL83_14011 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
| GCK72_018482 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| OTIPU.nOt.2.0.1.g07296 | Oscheius tipulae | From_analysis | WormBase-Compara | ||||||
| Pan_g3127 | Panagrellus redivivus | From_analysis | WormBase-Compara | ||||||
| Sp34_50188300 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
| chrV_pilon.g14161 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00243791 | Onchocerca volvulus | From_analysis | WormBase-Compara | ||||||
| WBGene00205618 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00257944 | Strongyloides ratti | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | unc-46 encodes a type I transmembrane protein that contains a single motif similar to the LAMP (lysosomal associated membrane glycoprotein) domain; UNC-46 and UNC-47, the C. elegans vesicular GABA transporter, are required in GABAergic neurons for loading GABA into synaptic vesicles and thus, for all GABA-mediated behaviors; a rescuing UNC-46::GFP fusion protein localizes to synaptic varicosities in the dorsal and ventral nerve cords; UNC-46 and UNC-47 are mutually required for sorting/localization to synaptic vesicles; when overexpressed, unc-47 can rescue unc-46 mutant animals. | Paper_evidence | WBPaper00030788 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 12 Jun 2008 00:00:00 | ||||||||
| Automated_description | Located in cytoplasmic vesicle and neuromuscular junction. Expressed in GLR and neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C04F5.3 | |||||||
| Corresponding_transcript | C04F5.3.1 | ||||||||
| Other_sequence | Acan_isotig12346 | ||||||||
| Associated_feature | WBsf652609 | ||||||||
| WBsf999935 | |||||||||
| WBsf233650 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00090126 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00039641 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028449 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00089966 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010134 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00089726 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00090284 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4785 | ||||||||
| Expr4786 | |||||||||
| Expr13159 | |||||||||
| Expr15441 | |||||||||
| Expr1021811 | |||||||||
| Expr1143737 | |||||||||
| Expr2017879 | |||||||||
| Expr2036015 | |||||||||
| Drives_construct | WBCnstr00001640 | ||||||||
| WBCnstr00008362 | |||||||||
| WBCnstr00008363 | |||||||||
| WBCnstr00012243 | |||||||||
| WBCnstr00020699 | |||||||||
| WBCnstr00034155 | |||||||||
| Construct_product | WBCnstr00001640 | ||||||||
| WBCnstr00034155 | |||||||||
| WBCnstr00038183 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (116) | |||||||||
| Interaction | WBInteraction000502940 | ||||||||
| WBInteraction000502941 | |||||||||
| WBInteraction000502942 | |||||||||
| WBInteraction000518962 | |||||||||
| WBProcess | WBbiopr:00000010 | ||||||||
| Map_info | Map | V | Position | -2.52065 | Error | 0.028521 | |||
| Well_ordered | |||||||||
| Positive | Inside_rearr | nDf32 | |||||||
| yDp1 | |||||||||
| nDf33 | |||||||||
| sDf26 | |||||||||
| rT1 | |||||||||
| Positive_clone | C04F5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Mapping_data | 2_point (27) | ||||||||
| Multi_point (41) | |||||||||
| Pos_neg_data | 845 | ||||||||
| 2134 | |||||||||
| 3076 | |||||||||
| 3259 | |||||||||
| Reference (65) | |||||||||
| Method | Gene |
