WormBase Tree Display for Gene: WBGene00007929
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| WBGene00007929 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 4 | |||||||
| Name | CGC_name | dmd-10 | Person_evidence | WBPerson1375 | |||||
| Sequence_name | C34D1.1 | ||||||||
| Molecular_name | C34D1.1 | ||||||||
| C34D1.1.1 | |||||||||
| CE54228 | |||||||||
| Other_name | dmd-11 | ||||||||
| CELE_C34D1.1 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | dmd-10 | ||||||||
| DB_info | Database | AceView | gene | 5N702 | |||||
| 5N704 | |||||||||
| WormQTL | gene | WBGene00007929 | |||||||
| WormFlux | gene | WBGene00007929 | |||||||
| NDB | locus_tag | CELE_C34D1.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00007929|UniProtKB=G5EEJ1 | |||||||
| family | PTHR12322 | ||||||||
| NCBI | gene | 183202 | |||||||
| RefSeq | protein | NM_001392638.1 | |||||||
| SwissProt | UniProtAcc | G5EEJ1 | |||||||
| TREEFAM | TREEFAM_ID | TF317837 | |||||||
| UniProt_GCRP | UniProtAcc | G5EEJ1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 01 Feb 2008 14:29:54 | WBPerson4025 | Event | Acquires_merge | WBGene00010190 | ||||
| 3 | 26 Oct 2010 14:05:22 | WBPerson2970 | Name_change | CGC_name | dmd-10 | ||||
| 4 | 13 Jul 2020 10:55:47 | WBPerson1983 | Event | Acquires_merge | WBGene00007930 | ||||
| Acquires_merge | WBGene00007930 | ||||||||
| WBGene00010190 | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dmd | ||||||||
| Allele (205) | |||||||||
| Strain | WBStrain00033126 | ||||||||
| WBStrain00037237 | |||||||||
| WBStrain00037249 | |||||||||
| WBStrain00037268 | |||||||||
| WBStrain00037271 | |||||||||
| WBStrain00036404 | |||||||||
| WBStrain00036430 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00003100 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WBGene00003114 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00007058 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00007776 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00012832 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00017326 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00022060 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00019521 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00020708 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including male anatomical structure morphogenesis; mechanosensory behavior; and negative regulation of synapse pruning. Predicted to be located in nucleus. Expressed in several structures, including AVG; body wall musculature; head neurons; intestine; and vulval muscle. Is an ortholog of human DMRT1 (doublesex and mab-3 related transcription factor 1) and DMRTC2 (DMRT like family C2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C34D1.1 | |||||||
| Corresponding_CDS_history | C34D1.1:wp188 | ||||||||
| C34D1.1:wp277 | |||||||||
| Corresponding_transcript | C34D1.1.1 | ||||||||
| Other_sequence (17) | |||||||||
| Associated_feature (25) | |||||||||
| Transcription_factor | WBTranscriptionFactor000880 | ||||||||
| WBTranscriptionFactor000966 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00041859 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00029512 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033005 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041858 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022384 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011585 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011586 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048812 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7463 | ||||||||
| Expr7464 | |||||||||
| Expr14522 | |||||||||
| Expr1015231 | |||||||||
| Expr1019504 | |||||||||
| Expr1145877 | |||||||||
| Expr1145878 | |||||||||
| Expr2010953 | |||||||||
| Expr2029192 | |||||||||
| Drives_construct | WBCnstr00012607 | ||||||||
| WBCnstr00012608 | |||||||||
| WBCnstr00033374 | |||||||||
| WBCnstr00041073 | |||||||||
| Construct_product | WBCnstr00033374 | ||||||||
| WBCnstr00038826 | |||||||||
| Microarray_results (46) | |||||||||
| Expression_cluster (152) | |||||||||
| Interaction (164) | |||||||||
| Map_info | Map | V | Position | 4.98604 | Error | 0.001272 | |||
| Positive | Positive_clone | C34D1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00035228 | ||||||||
| WBPaper00047608 | |||||||||
| WBPaper00049547 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058324 | |||||||||
| WBPaper00061136 | |||||||||
| WBPaper00061480 | |||||||||
| WBPaper00064718 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
