WormBase Tree Display for Gene: WBGene00009654
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| WBGene00009654 | SMap | S_parent | Sequence | F43D9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | sly-1 | Person_evidence | WBPerson1963 | |||||
| Sequence_name | F43D9.3 | ||||||||
| Molecular_name | F43D9.3a | ||||||||
| F43D9.3a.1 | |||||||||
| CE44913 | |||||||||
| F43D9.3b | |||||||||
| CE44900 | |||||||||
| F43D9.3b.1 | |||||||||
| Other_name | phi-26 | Person_evidence | WBPerson2582 | ||||||
| CELE_F43D9.3 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | sly-1 | ||||||||
| DB_info | Database | AceView | gene | 3L601 | |||||
| WormQTL | gene | WBGene00009654 | |||||||
| WormFlux | gene | WBGene00009654 | |||||||
| NDB | locus_tag | CELE_F43D9.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009654|UniProtKB=Q20364 | |||||||
| family | PTHR11679 | ||||||||
| NCBI | gene | 185707 | |||||||
| RefSeq | protein | NM_066916.4 | |||||||
| NM_001129225.4 | |||||||||
| TREEFAM | TREEFAM_ID | TF105740 | |||||||
| TrEMBL | UniProtAcc | A7LPF3 | |||||||
| Q20364 | |||||||||
| UniProt_GCRP | UniProtAcc | Q20364 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 17 Mar 2005 13:54:35 | WBPerson2970 | Name_change | Other_name | phi-26 | ||||
| 3 | 07 Jun 2016 16:25:01 | WBPerson2970 | Name_change | CGC_name | sly-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sly | ||||||||
| Allele (235) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00005131 | ||||||||
| 00005132 | |||||||||
| 00005133 | |||||||||
| 00005134 | |||||||||
| 00117292 | |||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00006757 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00016643 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00016960 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00020298 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015130 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable syntaxin binding activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and intracellular protein transport. Predicted to be located in Golgi membrane. Is an ortholog of human SCFD1 (sec1 family domain containing 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F43D9.3a | |||||||
| F43D9.3b | |||||||||
| Corresponding_CDS_history | F43D9.3a:wp196 | ||||||||
| F43D9.3a:wp209 | |||||||||
| F43D9.3a:wp214 | |||||||||
| F43D9.3b:wp196 | |||||||||
| F43D9.3b:wp209 | |||||||||
| F43D9.3b:wp214 | |||||||||
| Corresponding_transcript | F43D9.3a.1 | ||||||||
| F43D9.3b.1 | |||||||||
| Other_sequence (68) | |||||||||
| Associated_feature (19) | |||||||||
| Experimental_info | RNAi_result (13) | ||||||||
| Expr_pattern | Expr1016675 | ||||||||
| Expr1034215 | |||||||||
| Expr1151050 | |||||||||
| Expr2015889 | |||||||||
| Expr2034122 | |||||||||
| Drives_construct | WBCnstr00032021 | ||||||||
| Construct_product | WBCnstr00032021 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (80) | |||||||||
| Interaction (46) | |||||||||
| Map_info | Map | III | Position | 3.06422 | |||||
| Positive | Positive_clone | F43D9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00030592 | ||||||||
| WBPaper00031865 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
